1 HOK comparison of CASAL and Casal2 model configurations

This document compares the results of at least 2 CASAL model configurations (base and at least one sensitivity) and up to 6 Casal2 model configurations (3 BetaDiff and 3 ADOL-C).

The CASAL model sensitivity 1 has a smaller minimisation tolerance value than the CASAL base model (1e-9 vs. 1e-6).

The Casal2 ADOL-C and BetaDiff low tolerance models have a smaller tolerance value than the CASAL base model (1e-9 vs. 1e-6).

1.1 HOK model characteristics

The main characteristics of the Test Case HOK (hoki) CASAL model are:

  • one stock, ages 1 - 17
  • one area, although many characteristics are separated into "east" and "west"
  • years 1972 - 2018, projection years 2019 - 2023
  • five time steps: Oct_Nov, Dec_Mar, Apr_Jun, End_Jun, and Jul_Sep
  • five stock categories: west.sa, east.cr, west.cr, west.wc, and east.cs (labeled "stock.area")
  • five migration processes, which have age-specific proportions specified
  • sex-specific natural mortality-at-age is double exponential
  • area-specific von Bertalanffy age-length relationship
  • area-specific length-weight relationship (\(W = aL^b\))
  • area-specific Beverton-Holt stock-recruitment relationships, with steepness (h) 0.75
  • ageing error is specified
  • surveys with double normal selectivity
  • six area-specific fisheries with double normal selectivity

Observation data include:

  • survey indices
  • survey proportions-at-age
  • fishery proportions-at-age

Parameters estimated include:

  • area-specific B0
  • parameters for the natural mortality-at-age ogive
  • catchability (q) for the surveys
  • parameters for the selectivity curves for the surveys
  • parameters for the selectivity curves for the fisheries
  • migration proportions by age
  • area-specific YCS (recruitment deviations)

1.2 R environment

## [1] "Fri Sep  9 12:00:28 2022"
## R version 3.6.0 (2019-04-26)
## Platform: x86_64-redhat-linux-gnu (64-bit)
## Running under: CentOS Linux 7 (Core)
## 
## Matrix products: default
## BLAS/LAPACK: /usr/lib64/R/lib/libRblas.so
## 
## locale:
##  [1] LC_CTYPE=en_GB.UTF-8       LC_NUMERIC=C              
##  [3] LC_TIME=en_GB.UTF-8        LC_COLLATE=en_GB.UTF-8    
##  [5] LC_MONETARY=en_GB.UTF-8    LC_MESSAGES=en_GB.UTF-8   
##  [7] LC_PAPER=en_GB.UTF_8       LC_NAME=C                 
##  [9] LC_ADDRESS=C               LC_TELEPHONE=C            
## [11] LC_MEASUREMENT=en_GB.UTF-8 LC_IDENTIFICATION=C       
## 
## attached base packages:
## [1] stats     graphics  grDevices utils     datasets  methods   base     
## 
## other attached packages:
##  [1] Casal2_22.09   casal_2.30     devtools_2.4.4 usethis_2.1.6  rlist_0.4.6.2 
##  [6] ggthemes_4.2.4 gridExtra_2.3  coda_0.19-4    ggmcmc_1.5.1.1 ggplot2_3.3.6 
## [11] tidyr_1.2.1    huxtable_5.5.0 dplyr_1.0.10   plyr_1.8.7    
## 
## loaded via a namespace (and not attached):
##  [1] Rcpp_1.0.9         lattice_0.20-38    prettyunits_1.1.1  ps_1.7.1          
##  [5] assertthat_0.2.1   digest_0.6.29      utf8_1.2.2         mime_0.12         
##  [9] R6_2.5.1           evaluate_0.16      pillar_1.8.1       rlang_1.0.5       
## [13] data.table_1.14.2  miniUI_0.1.1.1     urlchecker_1.0.1   callr_3.7.2       
## [17] jquerylib_0.1.4    rmarkdown_2.16     stringr_1.4.1      htmlwidgets_1.5.4 
## [21] munsell_0.5.0      shiny_1.7.2        compiler_3.6.0     httpuv_1.6.6      
## [25] xfun_0.32          pkgconfig_2.0.3    pkgbuild_1.3.1     htmltools_0.5.3   
## [29] tidyselect_1.1.2   tibble_3.1.8       reshape_0.8.9      fansi_1.0.3       
## [33] crayon_1.5.1       withr_2.5.0        later_1.3.0        grid_3.6.0        
## [37] jsonlite_1.8.0     xtable_1.8-4       GGally_2.1.2       gtable_0.3.1      
## [41] lifecycle_1.0.1    magrittr_2.0.3     scales_1.2.1       cli_3.4.0         
## [45] stringi_1.7.8      cachem_1.0.6       remotes_2.4.2      fs_1.5.2          
## [49] promises_1.2.0.1   bslib_0.4.0        ellipsis_0.3.2     generics_0.1.3    
## [53] vctrs_0.4.1        RColorBrewer_1.1-3 tools_3.6.0        glue_1.6.2        
## [57] purrr_0.3.4        pkgload_1.3.0      processx_3.7.0     fastmap_1.1.0     
## [61] yaml_2.3.5         colorspace_2.0-3   sessioninfo_1.2.2  memoise_2.0.1     
## [65] knitr_1.40         profvis_0.3.7      sass_0.4.2

1.3 CASAL and Casal2 model output

source('../../R-functions/report_read_in_CASAL_MPD_files.R')
source('../../R-functions/report_read_in_Casal2_MPD_files.R')

1.4 Tables

Tables of parameter estimates and objective function components for the CASAL and Casal2 model MPD results

CASAL parameter estimates
rownamesBase_ModelSensitivity_1Percent_Diff
q[CSacous].q               0.431200.431200.000
q[WCacous].q               0.300200.300200.000
q[CRsum].q               0.074310.074310.000
q[SAsum].q               0.059250.059250.000
q[SAaut].q               0.067170.067170.000
relative_abundance[CRsumbio].cv_process_error0.140500.140500.000
relative_abundance[SAsumbio].cv_process_error0.430600.430600.000
log_B0_total                 14.3400014.340000.000
B0_prop_stock1                 0.328700.328700.000
natural_mortality.all             0.296000.296000.000
selectivity[Wspsl].shift_a         -0.21740-0.217400.000
recruitment[E].YCS1            0.447800.447800.000
recruitment[E].YCS2            0.726800.726800.000
recruitment[E].YCS3            0.784500.784500.000
recruitment[E].YCS4            1.360001.360000.000
recruitment[E].YCS5            0.987800.987800.000
recruitment[E].YCS6            0.329300.329300.000
recruitment[E].YCS7            0.447200.447200.000
recruitment[E].YCS8            0.265600.265600.000
recruitment[E].YCS9            0.434200.434200.000
recruitment[E].YCS10           0.488000.488000.000
recruitment[E].YCS11           0.395700.395700.000
recruitment[E].YCS12           0.217900.217900.000
recruitment[E].YCS13           1.036001.036000.000
recruitment[E].YCS14           0.958900.958900.000
recruitment[E].YCS15           0.429000.429000.000
recruitment[E].YCS16           0.138100.138100.000
recruitment[E].YCS17           0.375000.375000.000
recruitment[E].YCS18           0.391600.391600.000
recruitment[E].YCS19           0.383100.383100.000
recruitment[E].YCS20           0.562900.562900.000
recruitment[E].YCS21           0.264000.264000.000
recruitment[E].YCS22           0.284500.284500.000
recruitment[E].YCS23           0.450000.450000.000
recruitment[E].YCS24           0.253100.253100.000
recruitment[E].YCS25           0.060000.060000.000
recruitment[E].YCS26           0.462200.462200.000
recruitment[E].YCS27           0.161600.161600.000
recruitment[E].YCS28           0.266900.266900.000
recruitment[E].YCS29           0.500400.500400.000
recruitment[E].YCS30           0.520000.520000.000
recruitment[E].YCS31           0.508800.508800.000
recruitment[E].YCS32           0.600600.600600.000
recruitment[E].YCS33           0.522100.522100.000
recruitment[E].YCS34           0.373000.373000.000
recruitment[E].YCS35           0.526800.526800.000
recruitment[E].YCS36           0.158600.158600.000
recruitment[E].YCS37           0.660600.660600.000
recruitment[E].YCS38           0.156000.156000.000
recruitment[E].YCS39           0.185800.185800.000
recruitment[E].YCS40           0.730600.730600.000
recruitment[E].YCS41           0.739000.739000.000
recruitment[E].YCS42           1.195001.195000.000
recruitment[W].YCS1            0.457000.457000.000
recruitment[W].YCS2            0.822200.822200.000
recruitment[W].YCS3            0.670000.670000.000
recruitment[W].YCS4            0.653900.653900.000
recruitment[W].YCS5            0.465900.465900.000
recruitment[W].YCS6            0.515100.515100.000
recruitment[W].YCS7            0.578200.578200.000
recruitment[W].YCS8            0.473300.473300.000
recruitment[W].YCS9            0.871900.871900.000
recruitment[W].YCS10           0.836500.836500.000
recruitment[W].YCS11           0.320200.320200.000
recruitment[W].YCS12           0.165000.165000.000
recruitment[W].YCS13           1.476001.476000.000
recruitment[W].YCS14           0.772800.772800.000
recruitment[W].YCS15           0.081350.081350.000
recruitment[W].YCS16           0.081580.081580.000
recruitment[W].YCS17           0.892800.892800.000
recruitment[W].YCS18           1.268001.268000.000
recruitment[W].YCS19           0.377200.377200.000
recruitment[W].YCS20           0.959400.959400.000
recruitment[W].YCS21           0.221100.221100.000
recruitment[W].YCS22           0.197200.197200.000
recruitment[W].YCS23           0.238000.238000.000
recruitment[W].YCS24           0.202900.202900.000
recruitment[W].YCS25           0.060000.060000.000
recruitment[W].YCS26           0.373000.373000.000
recruitment[W].YCS27           0.095480.095480.000
recruitment[W].YCS28           0.795600.795600.000
recruitment[W].YCS29           0.465200.465200.000
recruitment[W].YCS30           0.516600.516600.000
recruitment[W].YCS31           0.511300.511300.000
recruitment[W].YCS32           0.755400.755400.000
recruitment[W].YCS33           0.638900.638900.000
recruitment[W].YCS34           0.616900.616900.000
recruitment[W].YCS35           0.578400.578400.000
recruitment[W].YCS36           0.145500.145500.000
recruitment[W].YCS37           0.974800.974800.000
recruitment[W].YCS38           0.160200.160200.000
recruitment[W].YCS39           0.244400.244400.000
recruitment[W].YCS40           2.197002.197000.000
recruitment[W].YCS41           2.152002.152000.000
recruitment[W].YCS42           1.195001.195000.000
migration[Whome].rates_all1      0.327800.327800.000
migration[Whome].rates_all2      0.307800.307800.000
migration[Whome].rates_all3      0.476200.476200.000
migration[Whome].rates_all4      0.141800.141800.000
migration[Whome].rates_all5      0.468300.46840-0.021
migration[Whome].rates_all6      0.750300.750300.000
migration[Whome].rates_all7      0.788200.78840-0.025
migration[Whome].rates_all8      1.000001.000000.000
migration[Espmg].rates_all1      0.005660.005660.000
migration[Espmg].rates_all2      0.160200.160200.000
migration[Espmg].rates_all3      0.324100.324100.000
migration[Espmg].rates_all4      0.431200.431200.000
migration[Espmg].rates_all5      0.385500.385500.000
migration[Espmg].rates_all6      0.465300.465300.000
migration[Espmg].rates_all7      0.599000.599000.000
migration[Espmg].rates_all8      0.607800.607800.000
migration[Wspmg].rates_all1      0.106100.106100.000
migration[Wspmg].rates_all2      0.287700.287700.000
migration[Wspmg].rates_all3      0.270800.270800.000
migration[Wspmg].rates_all4      0.455300.455300.000
migration[Wspmg].rates_all5      0.484700.484700.000
migration[Wspmg].rates_all6      0.527100.527100.000
migration[Wspmg].rates_all7      0.660600.660600.000
migration[Wspmg].rates_all8      0.596300.596300.000
selectivity[Enspsl].all1            3.567003.567000.000
selectivity[Enspsl].all2            1.221001.221000.000
selectivity[Enspsl].all3            15.7100015.710000.000
selectivity[Wnspsl].all1            5.341005.341000.000
selectivity[Wnspsl].all2            2.839002.839000.000
selectivity[Wnspsl].all3            13.3800013.380000.000
selectivity[Espsl].all1            10.8800010.880000.000
selectivity[Espsl].all2            11.6800011.680000.000
selectivity[Espsl].all3            3.982003.982000.000
selectivity[CRsl].all1            1.000001.000000.000
selectivity[CRsl].all2            1.000001.000000.000
selectivity[CRsl].all3            9.300009.300000.000
selectivity[SAsl].all1            14.2500014.250000.000
selectivity[SAsl].all2            8.756008.756000.000
selectivity[SAsl].all3            1.315001.315000.000
Casal2 parameter estimates
rownamesbetadiff_casal_flags_onbetadiff_casal_flags_offbetadiff_casal_flags_on_low_toladolc_casal_flags_onadolc_casal_flags_offadolc_casal_flags_on_low_tol
catchability[CSacous].q                            0.427240.427240.431160.427240.427240.42786
catchability[WCacous].q                            0.312840.312840.300240.312840.312840.31244
catchability[CRsum].q                            0.068320.068320.074310.068320.068320.06811
catchability[SAsum].q                            0.067170.067170.059250.067170.067170.06706
catchability[SAaut].q                            0.075780.075780.067170.075780.075780.07563
observation[CRsumbio].process_error                0.140940.140940.140480.140940.140940.14089
observation[SAsumbio].process_error                0.423640.423640.430610.423640.423640.42381
parameter_transformation[log_sum_b0].log_total_parameter          14.3047014.3047014.3395014.3047014.3047014.30460
parameter_transformation[log_sum_b0].total_proportion_parameter   0.336220.336220.328710.336220.336220.33571
process[Instant_mortality].m{west.sa}                          0.312710.312710.295980.312710.312710.31293
time_varying[shifted_mu].a                            -0.22921-0.22921-0.21744-0.22921-0.22921-0.22959
process[recruit_E].recruitment_multipliers{1977}0.445370.445370.447820.445380.445380.44589
process[recruit_E].recruitment_multipliers{1978}0.729390.729390.726800.729390.729390.73052
process[recruit_E].recruitment_multipliers{1979}0.792310.792310.784540.792310.792310.79332
process[recruit_E].recruitment_multipliers{1980}1.386441.386441.360011.386441.386441.38827
process[recruit_E].recruitment_multipliers{1981}1.002651.002650.987761.002651.002651.00372
process[recruit_E].recruitment_multipliers{1982}0.334370.334370.329320.334370.334370.33462
process[recruit_E].recruitment_multipliers{1983}0.455020.455020.447230.455020.455020.45535
process[recruit_E].recruitment_multipliers{1984}0.269740.269740.265560.269740.269740.26989
process[recruit_E].recruitment_multipliers{1985}0.441060.441060.434180.441060.441060.44100
process[recruit_E].recruitment_multipliers{1986}0.494120.494120.488040.494120.494120.49422
process[recruit_E].recruitment_multipliers{1987}0.400100.400100.395700.400100.400100.40014
process[recruit_E].recruitment_multipliers{1988}0.219780.219780.217910.219780.219780.21982
process[recruit_E].recruitment_multipliers{1989}1.041311.041311.036401.041311.041311.04095
process[recruit_E].recruitment_multipliers{1990}0.963460.963460.958910.963460.963460.96315
process[recruit_E].recruitment_multipliers{1991}0.430950.430950.428990.430950.430950.43112
process[recruit_E].recruitment_multipliers{1992}0.137970.137970.138100.137970.137970.13798
process[recruit_E].recruitment_multipliers{1993}0.373850.373850.375000.373850.373850.37335
process[recruit_E].recruitment_multipliers{1994}0.388580.388580.391640.388580.388580.38757
process[recruit_E].recruitment_multipliers{1995}0.379950.379950.383100.379950.379950.37988
process[recruit_E].recruitment_multipliers{1996}0.557940.557940.562850.557940.557940.55726
process[recruit_E].recruitment_multipliers{1997}0.261780.261780.263990.261780.261780.26178
process[recruit_E].recruitment_multipliers{1998}0.282510.282510.284470.282510.282510.28248
process[recruit_E].recruitment_multipliers{1999}0.447810.447810.450030.447810.447810.44759
process[recruit_E].recruitment_multipliers{2000}0.252640.252640.253070.252640.252640.25249
process[recruit_E].recruitment_multipliers{2001}0.060000.060000.060000.060000.060000.06000
process[recruit_E].recruitment_multipliers{2002}0.460130.460130.462200.460130.460130.45987
process[recruit_E].recruitment_multipliers{2003}0.160860.160860.161650.160860.160860.16087
process[recruit_E].recruitment_multipliers{2004}0.266110.266110.266890.266110.266110.26560
process[recruit_E].recruitment_multipliers{2005}0.499590.499590.500380.499590.499590.49943
process[recruit_E].recruitment_multipliers{2006}0.520530.520530.520030.520530.520530.52031
process[recruit_E].recruitment_multipliers{2007}0.507640.507640.508820.507640.507640.50754
process[recruit_E].recruitment_multipliers{2008}0.600130.600130.600550.600130.600130.59986
process[recruit_E].recruitment_multipliers{2009}0.520870.520870.522150.520870.520870.52080
process[recruit_E].recruitment_multipliers{2010}0.371150.371150.373000.371150.371150.37047
process[recruit_E].recruitment_multipliers{2011}0.527900.527900.526810.527900.527900.52786
process[recruit_E].recruitment_multipliers{2012}0.156950.156950.158640.156950.156950.15690
process[recruit_E].recruitment_multipliers{2013}0.660470.660470.660580.660470.660470.66029
process[recruit_E].recruitment_multipliers{2014}0.155540.155540.156000.155540.155540.15558
process[recruit_E].recruitment_multipliers{2015}0.185180.185180.185840.185180.185180.18518
process[recruit_E].recruitment_multipliers{2016}0.728440.728440.730620.728440.728440.72808
process[recruit_E].recruitment_multipliers{2017}0.755870.755870.739000.755860.755860.75231
process[recruit_E].recruitment_multipliers{2018}1.188861.188861.195151.188861.188861.18939
process[recruit_W].recruitment_multipliers{1977}0.458690.458690.457020.458690.458690.45872
process[recruit_W].recruitment_multipliers{1978}0.814220.814220.822180.814220.814220.81433
process[recruit_W].recruitment_multipliers{1979}0.685150.685150.670000.685150.685150.68494
process[recruit_W].recruitment_multipliers{1980}0.669370.669370.653900.669370.669370.66905
process[recruit_W].recruitment_multipliers{1981}0.473070.473070.465900.473070.473070.47276
process[recruit_W].recruitment_multipliers{1982}0.520640.520640.515120.520640.520640.52052
process[recruit_W].recruitment_multipliers{1983}0.583440.583440.578240.583440.583440.58328
process[recruit_W].recruitment_multipliers{1984}0.474620.474620.473280.474620.474620.47440
process[recruit_W].recruitment_multipliers{1985}0.873090.873090.871920.873090.873090.87375
process[recruit_W].recruitment_multipliers{1986}0.836330.836330.836460.836330.836330.83738
process[recruit_W].recruitment_multipliers{1987}0.319420.319420.320240.319420.319420.31975
process[recruit_W].recruitment_multipliers{1988}0.164930.164930.164970.164930.164930.16484
process[recruit_W].recruitment_multipliers{1989}1.480071.480071.475551.480071.480071.48066
process[recruit_W].recruitment_multipliers{1990}0.774540.774540.772760.774540.774540.77530
process[recruit_W].recruitment_multipliers{1991}0.081480.081480.081340.081480.081480.08147
process[recruit_W].recruitment_multipliers{1992}0.081830.081830.081580.081830.081830.08180
process[recruit_W].recruitment_multipliers{1993}0.891970.891970.892800.891970.891970.89189
process[recruit_W].recruitment_multipliers{1994}1.267571.267571.267781.267571.267571.26783
process[recruit_W].recruitment_multipliers{1995}0.376520.376520.377220.376520.376520.37648
process[recruit_W].recruitment_multipliers{1996}0.955790.955790.959390.955790.955790.95557
process[recruit_W].recruitment_multipliers{1997}0.220260.220260.221130.220260.220260.22015
process[recruit_W].recruitment_multipliers{1998}0.196320.196320.197180.196320.196320.19626
process[recruit_W].recruitment_multipliers{1999}0.236430.236430.237950.236430.236430.23678
process[recruit_W].recruitment_multipliers{2000}0.200410.200410.202920.200410.200410.20061
process[recruit_W].recruitment_multipliers{2001}0.060000.060000.060000.060000.060000.06000
process[recruit_W].recruitment_multipliers{2002}0.370890.370890.373040.370890.370890.37133
process[recruit_W].recruitment_multipliers{2003}0.095060.095060.095480.095060.095060.09510
process[recruit_W].recruitment_multipliers{2004}0.795530.795530.795580.795530.795530.79576
process[recruit_W].recruitment_multipliers{2005}0.465700.465700.465170.465700.465700.46588
process[recruit_W].recruitment_multipliers{2006}0.517610.517610.516620.517610.517610.51784
process[recruit_W].recruitment_multipliers{2007}0.513050.513050.511260.513050.513050.51314
process[recruit_W].recruitment_multipliers{2008}0.754750.754750.755440.754750.754750.75487
process[recruit_W].recruitment_multipliers{2009}0.636920.636920.638910.636920.636920.63676
process[recruit_W].recruitment_multipliers{2010}0.615640.615640.616860.615640.615640.61614
process[recruit_W].recruitment_multipliers{2011}0.573050.573050.578410.573050.573050.57292
process[recruit_W].recruitment_multipliers{2012}0.146180.146180.145470.146180.146180.14626
process[recruit_W].recruitment_multipliers{2013}0.967080.967080.974780.967080.967080.96669
process[recruit_W].recruitment_multipliers{2014}0.159090.159090.160160.159090.159090.15897
process[recruit_W].recruitment_multipliers{2015}0.244020.244020.244440.244020.244020.24389
process[recruit_W].recruitment_multipliers{2016}2.186512.186512.196572.186512.186512.18474
process[recruit_W].recruitment_multipliers{2017}2.147582.147582.152042.147582.147582.14969
process[recruit_W].recruitment_multipliers{2018}1.189091.189091.195391.189091.189091.18962
selectivity[sel_Whome].v{1}                         0.321930.321930.327830.321930.321930.32136
selectivity[sel_Whome].v{2}                         0.284910.284910.307780.284910.284910.28386
selectivity[sel_Whome].v{3}                         0.459720.459720.476200.459720.459720.45775
selectivity[sel_Whome].v{4}                         0.135490.135490.141840.135490.135490.13502
selectivity[sel_Whome].v{5}                         0.437820.437820.468360.437820.437820.43169
selectivity[sel_Whome].v{6}                         0.708210.708210.750260.708210.708210.71891
selectivity[sel_Whome].v{7}                         0.999900.999900.788410.999910.999910.75961
selectivity[sel_Espmg].v{1}                         0.005640.005640.005660.005640.005640.00564
selectivity[sel_Espmg].v{2}                         0.159120.159120.160210.159120.159120.15901
selectivity[sel_Espmg].v{3}                         0.320820.320820.324110.320820.320820.32056
selectivity[sel_Espmg].v{4}                         0.425470.425470.431230.425470.425470.42513
selectivity[sel_Espmg].v{5}                         0.379530.379530.385460.379530.379530.37927
selectivity[sel_Espmg].v{6}                         0.458760.458760.465350.458760.458760.45847
selectivity[sel_Espmg].v{7}                         0.590810.590810.599020.590810.590810.59044
selectivity[sel_Espmg].v{8}                         0.611000.611000.607780.611000.611000.61064
selectivity[sel_Wspmg].v{1}                         0.105560.105560.106140.105560.105560.10553
selectivity[sel_Wspmg].v{2}                         0.291360.291360.287740.291360.291360.29139
selectivity[sel_Wspmg].v{3}                         0.270680.270680.270760.270680.270680.27066
selectivity[sel_Wspmg].v{4}                         0.455270.455270.455250.455270.455270.45520
selectivity[sel_Wspmg].v{5}                         0.484210.484210.484660.484210.484210.48434
selectivity[sel_Wspmg].v{6}                         0.524960.524960.527110.524960.524960.52398
selectivity[sel_Wspmg].v{7}                         0.652980.652980.660620.652980.652980.65591
selectivity[sel_Wspmg].v{8}                         0.601530.601530.596270.601530.601530.60101
selectivity[Enspsl].mu                           3.573183.573183.567163.573183.573183.57227
selectivity[Enspsl].sigma_l                      1.222451.222451.221081.222451.222451.22206
selectivity[Enspsl].sigma_r                      50.0000050.0000015.7137050.0000050.0000049.99990
selectivity[Wnspsl].mu                           5.328405.328405.341175.328405.328405.32952
selectivity[Wnspsl].sigma_l                      2.778152.778152.839342.778152.778152.77846
selectivity[Wnspsl].sigma_r                      49.9995049.9995013.3789050.0000050.0000049.99980
selectivity[Espsl].mu                           11.2567011.2567010.8788011.2567011.2567011.25470
selectivity[Espsl].sigma_l                      10.8674010.8674011.6775010.8674010.8674010.85940
selectivity[Espsl].sigma_r                      4.026254.026253.981654.026254.026254.02912
selectivity[CRsl].mu                           1.000001.000001.000001.000001.000001.00000
selectivity[CRsl].sigma_l                      46.5222046.5222046.0231046.5221046.5221046.52190
selectivity[CRsl].sigma_r                      10.0928010.092809.3004210.0928010.0928010.08780
selectivity[SAsl].mu                           14.8685014.8685014.2523014.8685014.8685014.86480
selectivity[SAsl].sigma_l                      8.694688.694688.755588.694688.694688.69281
selectivity[SAsl].sigma_r                      1.000001.000001.315191.000001.000001.00000
Casal2 parameter estimates: Percent Difference from betadiff_casal_flags_on
rownamesbetadiff_casal_flags_onbetadiff_casal_flags_offbetadiff_casal_flags_on_low_toladolc_casal_flags_onadolc_casal_flags_offadolc_casal_flags_on_low_tol
catchability[CSacous].q                            0.0000.000-0.9180.0000.000-0.145
catchability[WCacous].q                            0.0000.0004.0270.0000.0000.128
catchability[CRsum].q                            0.0000.000-8.7650.0000.0000.298
catchability[SAsum].q                            0.0000.00011.7970.0000.0000.172
catchability[SAaut].q                            0.0000.00011.3630.0000.0000.188
observation[CRsumbio].process_error                0.0000.0000.3280.0000.0000.035
observation[SAsumbio].process_error                0.0000.000-1.6450.0000.000-0.040
parameter_transformation[log_sum_b0].log_total_parameter          0.0000.000-0.2430.0000.0000.001
parameter_transformation[log_sum_b0].total_proportion_parameter   0.0000.0002.2340.0000.0000.151
process[Instant_mortality].m{west.sa}                          0.0000.0005.3490.0000.000-0.070
time_varying[shifted_mu].a                            0.0000.0005.1350.0000.000-0.166
process[recruit_E].recruitment_multipliers{1977}0.0000.000-0.549-0.000-0.000-0.117
process[recruit_E].recruitment_multipliers{1978}0.0000.0000.355-0.000-0.000-0.156
process[recruit_E].recruitment_multipliers{1979}0.0000.0000.9810.0000.000-0.128
process[recruit_E].recruitment_multipliers{1980}0.0000.0001.9060.0000.000-0.132
process[recruit_E].recruitment_multipliers{1981}0.0000.0001.4850.0000.000-0.107
process[recruit_E].recruitment_multipliers{1982}0.0000.0001.5120.0000.000-0.073
process[recruit_E].recruitment_multipliers{1983}0.0000.0001.7120.0000.000-0.072
process[recruit_E].recruitment_multipliers{1984}0.0000.0001.5510.0000.000-0.055
process[recruit_E].recruitment_multipliers{1985}0.0000.0001.5590.0000.0000.013
process[recruit_E].recruitment_multipliers{1986}0.0000.0001.2290.0000.000-0.022
process[recruit_E].recruitment_multipliers{1987}0.0000.0001.1020.0000.000-0.009
process[recruit_E].recruitment_multipliers{1988}0.0000.0000.8500.0000.000-0.022
process[recruit_E].recruitment_multipliers{1989}0.0000.0000.4720.0000.0000.035
process[recruit_E].recruitment_multipliers{1990}0.0000.0000.4710.0000.0000.032
process[recruit_E].recruitment_multipliers{1991}0.0000.0000.4550.0000.000-0.040
process[recruit_E].recruitment_multipliers{1992}0.0000.000-0.1010.0000.000-0.009
process[recruit_E].recruitment_multipliers{1993}0.0000.000-0.3070.0000.0000.135
process[recruit_E].recruitment_multipliers{1994}0.0000.000-0.7870.0000.0000.259
process[recruit_E].recruitment_multipliers{1995}0.0000.000-0.8310.0000.0000.016
process[recruit_E].recruitment_multipliers{1996}0.0000.000-0.8800.0000.0000.122
process[recruit_E].recruitment_multipliers{1997}0.0000.000-0.8430.0000.000-0.002
process[recruit_E].recruitment_multipliers{1998}0.0000.000-0.6950.0000.0000.008
process[recruit_E].recruitment_multipliers{1999}0.0000.000-0.4960.0000.0000.049
process[recruit_E].recruitment_multipliers{2000}0.0000.000-0.1700.0000.0000.061
process[recruit_E].recruitment_multipliers{2001}0.0000.0000.0000.0000.0000.000
process[recruit_E].recruitment_multipliers{2002}0.0000.000-0.4490.0000.0000.057
process[recruit_E].recruitment_multipliers{2003}0.0000.000-0.4890.0000.000-0.007
process[recruit_E].recruitment_multipliers{2004}0.0000.000-0.2940.0000.0000.191
process[recruit_E].recruitment_multipliers{2005}0.0000.000-0.1590.0000.0000.031
process[recruit_E].recruitment_multipliers{2006}0.0000.0000.0960.0000.0000.043
process[recruit_E].recruitment_multipliers{2007}0.0000.000-0.2330.0000.0000.021
process[recruit_E].recruitment_multipliers{2008}0.0000.000-0.0700.0000.0000.046
process[recruit_E].recruitment_multipliers{2009}0.0000.000-0.2450.0000.0000.014
process[recruit_E].recruitment_multipliers{2010}0.0000.000-0.5000.0000.0000.184
process[recruit_E].recruitment_multipliers{2011}0.0000.0000.2060.0000.0000.007
process[recruit_E].recruitment_multipliers{2012}0.0000.000-1.0740.0000.0000.032
process[recruit_E].recruitment_multipliers{2013}0.0000.000-0.0170.0000.0000.028
process[recruit_E].recruitment_multipliers{2014}0.0000.000-0.2940.0000.000-0.030
process[recruit_E].recruitment_multipliers{2015}0.0000.000-0.3550.0000.0000.002
process[recruit_E].recruitment_multipliers{2016}0.0000.000-0.2990.0000.0000.049
process[recruit_E].recruitment_multipliers{2017}0.0000.0002.2310.0000.0000.471
process[recruit_E].recruitment_multipliers{2018}0.0000.000-0.5290.0000.000-0.045
process[recruit_W].recruitment_multipliers{1977}0.0000.0000.3650.0000.000-0.006
process[recruit_W].recruitment_multipliers{1978}0.0000.000-0.9770.0000.000-0.014
process[recruit_W].recruitment_multipliers{1979}0.0000.0002.210-0.000-0.0000.030
process[recruit_W].recruitment_multipliers{1980}0.0000.0002.3120.0000.0000.048
process[recruit_W].recruitment_multipliers{1981}0.0000.0001.5170.0000.0000.067
process[recruit_W].recruitment_multipliers{1982}0.0000.0001.0610.0000.0000.023
process[recruit_W].recruitment_multipliers{1983}0.0000.0000.8920.0000.0000.027
process[recruit_W].recruitment_multipliers{1984}0.0000.0000.2840.0000.0000.047
process[recruit_W].recruitment_multipliers{1985}0.0000.0000.1340.0000.000-0.076
process[recruit_W].recruitment_multipliers{1986}0.0000.000-0.0160.0000.000-0.125
process[recruit_W].recruitment_multipliers{1987}0.0000.000-0.2570.0000.000-0.103
process[recruit_W].recruitment_multipliers{1988}0.0000.000-0.0210.0000.0000.055
process[recruit_W].recruitment_multipliers{1989}0.0000.0000.3050.0000.000-0.040
process[recruit_W].recruitment_multipliers{1990}0.0000.0000.2290.0000.000-0.099
process[recruit_W].recruitment_multipliers{1991}0.0000.0000.1600.0000.0000.003
process[recruit_W].recruitment_multipliers{1992}0.0000.0000.3040.0000.0000.037
process[recruit_W].recruitment_multipliers{1993}0.0000.000-0.0930.0000.0000.009
process[recruit_W].recruitment_multipliers{1994}0.0000.000-0.0170.0000.000-0.021
process[recruit_W].recruitment_multipliers{1995}0.0000.000-0.1850.0000.0000.011
process[recruit_W].recruitment_multipliers{1996}0.0000.000-0.3770.0000.0000.023
process[recruit_W].recruitment_multipliers{1997}0.0000.000-0.3920.0000.0000.054
process[recruit_W].recruitment_multipliers{1998}0.0000.000-0.4400.0000.0000.028
process[recruit_W].recruitment_multipliers{1999}0.0000.000-0.6440.0000.000-0.147
process[recruit_W].recruitment_multipliers{2000}0.0000.000-1.2510.0000.000-0.099
process[recruit_W].recruitment_multipliers{2001}0.0000.0000.0000.0000.0000.000
process[recruit_W].recruitment_multipliers{2002}0.0000.000-0.5800.0000.000-0.117
process[recruit_W].recruitment_multipliers{2003}0.0000.000-0.4460.0000.000-0.037
process[recruit_W].recruitment_multipliers{2004}0.0000.000-0.0070.0000.000-0.029
process[recruit_W].recruitment_multipliers{2005}0.0000.0000.1140.0000.000-0.039
process[recruit_W].recruitment_multipliers{2006}0.0000.0000.1910.0000.000-0.045
process[recruit_W].recruitment_multipliers{2007}0.0000.0000.3500.0000.000-0.017
process[recruit_W].recruitment_multipliers{2008}0.0000.000-0.0910.0000.000-0.015
process[recruit_W].recruitment_multipliers{2009}0.0000.000-0.312-0.000-0.0000.025
process[recruit_W].recruitment_multipliers{2010}0.0000.000-0.1980.0000.000-0.080
process[recruit_W].recruitment_multipliers{2011}0.0000.000-0.9340.0000.0000.024
process[recruit_W].recruitment_multipliers{2012}0.0000.0000.4830.0000.000-0.055
process[recruit_W].recruitment_multipliers{2013}0.0000.000-0.7960.0000.0000.041
process[recruit_W].recruitment_multipliers{2014}0.0000.000-0.6740.0000.0000.075
process[recruit_W].recruitment_multipliers{2015}0.0000.000-0.1720.0000.0000.052
process[recruit_W].recruitment_multipliers{2016}0.0000.000-0.4600.0000.0000.081
process[recruit_W].recruitment_multipliers{2017}0.0000.000-0.2080.0000.000-0.098
process[recruit_W].recruitment_multipliers{2018}0.0000.000-0.5300.0000.000-0.045
selectivity[sel_Whome].v{1}                         0.0000.000-1.8330.0000.0000.177
selectivity[sel_Whome].v{2}                         0.0000.000-8.0270.0000.0000.370
selectivity[sel_Whome].v{3}                         0.0000.000-3.5840.0000.0000.430
selectivity[sel_Whome].v{4}                         0.0000.000-4.6870.0010.0010.344
selectivity[sel_Whome].v{5}                         0.0000.000-6.975-0.000-0.0001.400
selectivity[sel_Whome].v{6}                         0.0000.000-5.9370.0000.000-1.510
selectivity[sel_Whome].v{7}                         0.0000.00021.151-0.001-0.00124.032
selectivity[sel_Espmg].v{1}                         0.0000.000-0.3320.0000.0000.080
selectivity[sel_Espmg].v{2}                         0.0000.000-0.6830.0000.0000.073
selectivity[sel_Espmg].v{3}                         0.0000.000-1.0280.0000.0000.078
selectivity[sel_Espmg].v{4}                         0.0000.000-1.3540.0000.0000.079
selectivity[sel_Espmg].v{5}                         0.0000.000-1.5630.0000.0000.069
selectivity[sel_Espmg].v{6}                         0.0000.000-1.4360.0000.0000.063
selectivity[sel_Espmg].v{7}                         0.0000.000-1.3890.0000.0000.062
selectivity[sel_Espmg].v{8}                         0.0000.0000.5280.0000.0000.060
selectivity[sel_Wspmg].v{1}                         0.0000.000-0.553-0.001-0.0010.032
selectivity[sel_Wspmg].v{2}                         0.0000.0001.2420.0000.000-0.010
selectivity[sel_Wspmg].v{3}                         0.0000.000-0.0290.0000.0000.008
selectivity[sel_Wspmg].v{4}                         0.0000.0000.0040.0000.0000.016
selectivity[sel_Wspmg].v{5}                         0.0000.000-0.0920.0000.000-0.026
selectivity[sel_Wspmg].v{6}                         0.0000.000-0.4090.0000.0000.187
selectivity[sel_Wspmg].v{7}                         0.0000.000-1.1710.0000.000-0.449
selectivity[sel_Wspmg].v{8}                         0.0000.0000.8750.0000.0000.087
selectivity[Enspsl].mu                           0.0000.0000.1680.0000.0000.025
selectivity[Enspsl].sigma_l                      0.0000.0000.1120.0000.0000.032
selectivity[Enspsl].sigma_r                      0.0000.00068.5730.0000.0000.000
selectivity[Wnspsl].mu                           0.0000.000-0.2400.0000.000-0.021
selectivity[Wnspsl].sigma_l                      0.0000.000-2.2030.0000.000-0.011
selectivity[Wnspsl].sigma_r                      0.0000.00073.242-0.001-0.001-0.001
selectivity[Espsl].mu                           0.0000.0003.3570.0000.0000.018
selectivity[Espsl].sigma_l                      0.0000.000-7.4540.0000.0000.074
selectivity[Espsl].sigma_r                      0.0000.0001.1080.0000.000-0.071
selectivity[CRsl].mu                           0.0000.0000.0000.0000.0000.000
selectivity[CRsl].sigma_l                      0.0000.0001.0730.0000.0000.001
selectivity[CRsl].sigma_r                      0.0000.0007.8510.0000.0000.050
selectivity[SAsl].mu                           0.0000.0004.1440.0000.0000.025
selectivity[SAsl].sigma_l                      0.0000.000-0.7000.0000.0000.022
selectivity[SAsl].sigma_r                      0.0000.000-31.5190.0000.0000.000

CASAL objective function component values
ComponentBase_ModelSensitivity_1
CRsumbio-31.030-31.030
CSacous-9.836-9.836
SAautbio-3.984-3.984
SAsumbio-6.146-6.146
WCacous-5.916-5.916
CRsumage323.800323.800
SAautage35.12035.120
SAsumage221.100221.100
EnspOLF24.28024.280
Enspage256.100256.100
Espage581.500581.500
WnspOLF70.25070.250
Wnspage157.000157.000
Wspage364.800364.800
pspawn-13.130-13.130
pspawn_1993-6.015-6.015
prior_on_q[CSacous].q-0.839-0.839
prior_on_q[WCacous].q-1.202-1.202
prior_on_q[CRsum].q-2.207-2.207
prior_on_q[SAsum].q-1.557-1.557
prior_on_q[SAaut].q-1.762-1.762
prior_on_relative_abundance[CRsumbio].cv_process_error0.0000.000
prior_on_relative_abundance[SAsumbio].cv_process_error0.0000.000
prior_on_log_B0_total0.0000.000
prior_on_B0_prop_stock112.56012.560
prior_on_natural_mortality.all-1.217-1.217
prior_on_selectivity[Wspsl].shift_a0.3780.378
prior_on_recruitment[E].YCS-13.750-13.750
prior_on_recruitment[W].YCS-1.785-1.785
prior_on_migration[Whome].rates_all0.0000.000
prior_on_migration[Espmg].rates_all0.0000.000
prior_on_migration[Wspmg].rates_all0.0000.000
prior_on_selectivity[Enspsl].all0.0000.000
prior_on_selectivity[Wnspsl].all0.0000.000
prior_on_selectivity[Espsl].all0.0000.000
prior_on_selectivity[CRsl].all0.0000.000
prior_on_selectivity[SAsl].all0.0000.000
Umax_Ensp10.0000.000
Umax_Ensp20.0000.000
Umax_Wnsp10.0000.000
Umax_Wnsp20.0000.000
Umax_Esp0.0000.000
Umax_Wsp0.0000.000
YCS.eq.160.0000.000
sp.migr0.0130.013
Total1947.0001947.000
Casal2 objective function component values
rownamesbetadiff_casal_flags_onbetadiff_casal_flags_offbetadiff_casal_flags_on_low_toladolc_casal_flags_onadolc_casal_flags_offadolc_casal_flags_on_low_tol
observation->CSacousbio->1991                              2.3422.3422.4042.3422.3422.344
observation->CSacousbio->1993                              -0.577-0.577-0.588-0.577-0.577-0.577
observation->CSacousbio->1994                              -0.016-0.016-0.030-0.016-0.016-0.016
observation->CSacousbio->1995                              -0.562-0.562-0.567-0.562-0.562-0.562
observation->CSacousbio->1996                              -0.027-0.0270.013-0.027-0.027-0.027
observation->CSacousbio->1997                              -0.912-0.912-0.899-0.912-0.912-0.912
observation->CSacousbio->1998                              -0.054-0.054-0.004-0.054-0.054-0.055
observation->CSacousbio->1999                              -1.025-1.025-1.012-1.025-1.025-1.025
observation->CSacousbio->2001                              -1.217-1.217-1.211-1.217-1.217-1.217
observation->CSacousbio->2002                              -0.297-0.297-0.338-0.297-0.297-0.297
observation->CSacousbio->2003                              -0.845-0.845-0.863-0.845-0.845-0.845
observation->CSacousbio->2005                              -0.929-0.929-0.927-0.929-0.929-0.929
observation->CSacousbio->2006                              -0.939-0.939-0.950-0.939-0.939-0.939
observation->CSacousbio->2007                              -0.623-0.623-0.600-0.623-0.623-0.623
observation->CSacousbio->2008                              -1.094-1.094-1.125-1.094-1.094-1.094
observation->CSacousbio->2009                              -0.185-0.185-0.110-0.185-0.185-0.186
observation->CSacousbio->2011                              -1.021-1.021-1.000-1.021-1.021-1.021
observation->CSacousbio->2013                              -0.892-0.892-0.855-0.892-0.892-0.892
observation->CSacousbio->2015                              -0.190-0.190-0.150-0.190-0.190-0.191
observation->CSacousbio->2017                              -1.020-1.020-1.021-1.020-1.020-1.020
observation->WCacousbio->1988                              -0.588-0.588-0.588-0.588-0.588-0.588
observation->WCacousbio->1989                              -0.183-0.183-0.168-0.183-0.183-0.184
observation->WCacousbio->1990                              -0.332-0.332-0.327-0.332-0.332-0.331
observation->WCacousbio->1991                              -0.425-0.425-0.425-0.425-0.425-0.425
observation->WCacousbio->1992                              -0.744-0.744-0.744-0.744-0.744-0.744
observation->WCacousbio->1993                              -0.369-0.369-0.374-0.369-0.369-0.371
observation->WCacousbio->1997                              -0.054-0.054-0.043-0.054-0.054-0.055
observation->WCacousbio->2000                              -1.265-1.265-1.272-1.265-1.265-1.264
observation->WCacousbio->2012                              -0.906-0.906-0.896-0.906-0.906-0.906
observation->WCacousbio->2013                              -1.079-1.079-1.079-1.079-1.079-1.079
observation->CRsumbio->1992                              -1.634-1.634-1.647-1.634-1.634-1.634
observation->CRsumbio->1993                              0.0400.0400.0430.0400.0400.041
observation->CRsumbio->1994                              -1.760-1.760-1.760-1.760-1.760-1.761
observation->CRsumbio->1995                              -1.425-1.425-1.406-1.425-1.425-1.431
observation->CRsumbio->1996                              -1.690-1.690-1.699-1.690-1.690-1.691
observation->CRsumbio->1997                              -0.607-0.607-0.635-0.607-0.607-0.609
observation->CRsumbio->1998                              -1.203-1.203-1.210-1.203-1.203-1.205
observation->CRsumbio->1999                              -0.953-0.953-0.919-0.953-0.953-0.950
observation->CRsumbio->2000                              -1.629-1.629-1.632-1.629-1.629-1.629
observation->CRsumbio->2001                              -1.773-1.773-1.775-1.773-1.773-1.773
observation->CRsumbio->2002                              -1.209-1.209-1.206-1.209-1.209-1.205
observation->CRsumbio->2003                              -1.749-1.749-1.744-1.749-1.749-1.748
observation->CRsumbio->2004                              -0.818-0.818-0.803-0.818-0.818-0.821
observation->CRsumbio->2005                              -1.471-1.471-1.477-1.471-1.471-1.470
observation->CRsumbio->2006                              -1.314-1.314-1.306-1.314-1.314-1.314
observation->CRsumbio->2007                              -0.727-0.727-0.756-0.727-0.727-0.726
observation->CRsumbio->2008                              -0.373-0.373-0.402-0.373-0.373-0.376
observation->CRsumbio->2009                              -0.586-0.586-0.559-0.586-0.586-0.587
observation->CRsumbio->2010                              -1.349-1.349-1.359-1.349-1.349-1.350
observation->CRsumbio->2011                              -1.096-1.096-1.105-1.096-1.096-1.094
observation->CRsumbio->2012                              -1.439-1.439-1.448-1.439-1.439-1.438
observation->CRsumbio->2013                              -1.494-1.494-1.491-1.494-1.494-1.494
observation->CRsumbio->2014                              -1.768-1.768-1.770-1.768-1.768-1.768
observation->CRsumbio->2016                              -1.410-1.410-1.411-1.410-1.410-1.411
observation->CRsumbio->2018                              -1.552-1.552-1.554-1.552-1.552-1.552
observation->SAsumbio->1992                              -0.597-0.597-0.588-0.597-0.597-0.596
observation->SAsumbio->1993                              -0.314-0.314-0.309-0.314-0.314-0.314
observation->SAsumbio->1994                              0.1960.1960.1860.1960.1960.194
observation->SAsumbio->2001                              -0.835-0.835-0.822-0.835-0.835-0.834
observation->SAsumbio->2002                              -0.794-0.794-0.777-0.794-0.794-0.794
observation->SAsumbio->2003                              -0.837-0.837-0.825-0.837-0.837-0.836
observation->SAsumbio->2004                              0.7320.7320.7340.7320.7320.735
observation->SAsumbio->2005                              -0.258-0.258-0.218-0.258-0.258-0.255
observation->SAsumbio->2006                              -0.600-0.600-0.558-0.600-0.600-0.598
observation->SAsumbio->2007                              0.6360.6360.6540.6360.6360.637
observation->SAsumbio->2008                              -0.461-0.461-0.462-0.461-0.461-0.463
observation->SAsumbio->2009                              -0.585-0.585-0.583-0.585-0.585-0.584
observation->SAsumbio->2010                              -0.143-0.143-0.147-0.143-0.143-0.146
observation->SAsumbio->2012                              -0.848-0.848-0.835-0.848-0.848-0.848
observation->SAsumbio->2013                              -0.797-0.797-0.786-0.797-0.797-0.796
observation->SAsumbio->2015                              -0.200-0.200-0.189-0.200-0.200-0.201
observation->SAsumbio->2017                              -0.638-0.638-0.620-0.638-0.638-0.638
observation->SAautbio->1992                              -1.459-1.459-1.450-1.459-1.459-1.460
observation->SAautbio->1996                              -1.233-1.233-1.250-1.233-1.233-1.232
observation->SAautbio->1998                              -1.308-1.308-1.284-1.308-1.308-1.306
observation->Espage->1988                              19.79319.79319.64019.79319.79319.790
observation->Espage->1989                              15.85815.85815.86215.85815.85815.857
observation->Espage->1990                              21.48821.48821.44621.48821.48821.486
observation->Espage->1991                              20.64120.64120.61220.64120.64120.640
observation->Espage->1992                              24.08924.08924.02024.08924.08924.092
observation->Espage->1993                              19.30519.30519.32819.30519.30519.304
observation->Espage->1994                              20.52820.52820.50320.52820.52820.522
observation->Espage->1995                              22.54122.54122.55922.54122.54122.530
observation->Espage->1996                              18.59018.59018.57718.59018.59018.590
observation->Espage->1997                              20.97420.97420.96420.97420.97420.978
observation->Espage->1998                              20.58720.58720.61120.58720.58720.579
observation->Espage->1999                              22.88622.88622.86222.88622.88622.875
observation->Espage->2000                              23.32123.32123.31423.32123.32123.321
observation->Espage->2001                              20.73520.73520.77320.73520.73520.735
observation->Espage->2002                              26.24826.24826.28726.24826.24826.243
observation->Espage->2003                              19.12019.12019.12019.12019.12019.118
observation->Espage->2004                              22.69222.69222.64222.69222.69222.698
observation->Espage->2005                              26.12226.12226.07026.12226.12226.120
observation->Espage->2006                              23.24223.24223.14923.24223.24223.245
observation->Espage->2007                              25.27425.27425.21025.27425.27425.277
observation->Espage->2008                              22.16722.16722.12922.16722.16722.166
observation->Espage->2009                              18.69118.69118.69018.69118.69118.691
observation->Espage->2010                              21.85521.85521.85121.85521.85521.856
observation->Espage->2014                              20.61620.61620.64820.61620.61620.614
observation->Espage->2015                              21.82321.82321.87021.82321.82321.820
observation->Espage->2016                              21.20421.20421.20421.20421.20421.203
observation->Espage->2017                              21.57521.57521.56321.57521.57521.578
observation->Wspage->1988                              15.72415.72415.75315.72415.72415.729
observation->Wspage->1989                              11.55511.55511.56611.55511.55511.558
observation->Wspage->1990                              11.75211.75211.79011.75211.75211.750
observation->Wspage->1991                              13.03613.03613.05113.03613.03613.037
observation->Wspage->1992                              10.17810.17810.17010.17810.17810.179
observation->Wspage->1993                              10.56910.56910.57910.56910.56910.571
observation->Wspage->1994                              9.9189.9189.9249.9189.9189.918
observation->Wspage->1995                              13.40313.40313.39613.40313.40313.399
observation->Wspage->1996                              11.84011.84011.84411.84011.84011.841
observation->Wspage->1997                              11.23011.23011.24311.23011.23011.233
observation->Wspage->1998                              11.76111.76111.76211.76111.76111.761
observation->Wspage->1999                              11.97511.97511.98111.97511.97511.976
observation->Wspage->2000                              11.25611.25611.26011.25611.25611.256
observation->Wspage->2001                              12.17912.17912.20112.17912.17912.181
observation->Wspage->2002                              9.7319.7319.7459.7319.7319.732
observation->Wspage->2003                              9.5559.5559.5569.5559.5559.555
observation->Wspage->2004                              14.34014.34014.30414.34014.34014.342
observation->Wspage->2005                              14.93214.93214.97714.93214.93214.934
observation->Wspage->2006                              13.81713.81713.87213.81713.81713.817
observation->Wspage->2007                              11.49811.49811.51611.49811.49811.500
observation->Wspage->2008                              12.19512.19512.19412.19512.19512.196
observation->Wspage->2009                              12.63112.63112.59412.63112.63112.635
observation->Wspage->2010                              11.31611.31611.29911.31611.31611.317
observation->Wspage->2011                              11.15411.15411.13711.15411.15411.155
observation->Wspage->2012                              11.86711.86711.86011.86711.86711.866
observation->Wspage->2013                              11.04111.04111.06511.04111.04111.043
observation->Wspage->2014                              12.94412.94412.94112.94412.94412.944
observation->Wspage->2015                              13.13413.13413.10113.13413.13413.136
observation->Wspage->2016                              14.27214.27214.27314.27214.27214.268
observation->Wspage->2017                              13.74513.74513.79713.74513.74513.746
observation->EnspOLF->1992                              4.3974.3974.3884.3974.3974.396
observation->EnspOLF->1994                              6.6476.6476.6786.6476.6476.645
observation->EnspOLF->1996                              7.8977.8977.9067.8977.8977.899
observation->EnspOLF->1998                              5.3015.3015.3035.3015.3015.301
observation->Enspage->1999                              14.33214.33214.28714.33214.33214.331
observation->Enspage->2000                              13.97513.97513.96013.97513.97513.973
observation->Enspage->2001                              13.97913.97913.92913.97913.97913.959
observation->Enspage->2002                              12.08112.08112.07812.08112.08112.087
observation->Enspage->2003                              9.7009.7009.7069.7009.7009.702
observation->Enspage->2004                              12.96612.96612.98612.96612.96612.972
observation->Enspage->2005                              11.01211.01211.00911.01211.01211.009
observation->Enspage->2006                              12.74112.74112.71212.74112.74112.744
observation->Enspage->2007                              11.06111.06111.05211.06111.06111.060
observation->Enspage->2008                              12.10412.10412.10112.10412.10412.100
observation->Enspage->2009                              10.05610.05610.05510.05610.05610.055
observation->Enspage->2010                              17.58117.58117.62717.58117.58117.576
observation->Enspage->2011                              13.39913.39913.41213.39913.39913.402
observation->Enspage->2012                              13.14913.14913.13413.14913.14913.148
observation->Enspage->2013                              16.69416.69416.65916.69416.69416.691
observation->Enspage->2014                              13.86913.86913.87013.86913.86913.868
observation->Enspage->2015                              12.76012.76012.77612.76012.76012.764
observation->Enspage->2016                              19.22419.22419.20319.22419.22419.222
observation->Enspage->2017                              15.56215.56215.51115.56215.56215.552
observation->WnspOLF->1992                              10.12210.12210.12910.12210.12210.124
observation->WnspOLF->1993                              9.0459.0458.9919.0459.0459.047
observation->WnspOLF->1994                              15.93015.93015.89315.93015.93015.931
observation->WnspOLF->1996                              9.7889.7889.7529.7889.7889.784
observation->WnspOLF->1999                              11.55311.55311.59311.55311.55311.553
observation->WnspOLF->2000                              13.81213.81213.89213.81213.81213.817
observation->Wnspage->2001                              8.0328.0327.9948.0328.0328.036
observation->Wnspage->2002                              8.7158.7158.7018.7158.7158.714
observation->Wnspage->2003                              10.47310.47310.50710.47310.47310.473
observation->Wnspage->2004                              7.1557.1557.1407.1557.1557.154
observation->Wnspage->2006                              9.5899.5899.5519.5899.5899.590
observation->Wnspage->2007                              10.86110.86110.82210.86110.86110.860
observation->Wnspage->2008                              12.42512.42512.43512.42512.42512.422
observation->Wnspage->2009                              14.71614.71614.79014.71614.71614.719
observation->Wnspage->2010                              11.40511.40511.37011.40511.40511.405
observation->Wnspage->2011                              11.26711.26711.27511.26711.26711.265
observation->Wnspage->2012                              10.45410.45410.46510.45410.45410.453
observation->Wnspage->2013                              13.63313.63313.63413.63313.63313.634
observation->Wnspage->2014                              12.60812.60812.59712.60812.60812.609
observation->Wnspage->2016                              15.68715.68715.72215.68715.68715.683
observation->CRsumage->1992                              15.58415.58415.56615.58415.58415.570
observation->CRsumage->1993                              10.61610.61610.62410.61610.61610.613
observation->CRsumage->1994                              18.17018.17018.13018.17018.17018.174
observation->CRsumage->1995                              14.28514.28514.24214.28514.28514.287
observation->CRsumage->1996                              11.56711.56711.60711.56711.56711.566
observation->CRsumage->1997                              15.75415.75415.68815.75415.75415.750
observation->CRsumage->1998                              14.69014.69014.69014.69014.69014.686
observation->CRsumage->1999                              12.06112.06112.08412.06112.06112.061
observation->CRsumage->2000                              14.32314.32314.28314.32314.32314.326
observation->CRsumage->2001                              19.65919.65919.52019.65919.65919.651
observation->CRsumage->2002                              10.96910.96910.96010.96910.96910.971
observation->CRsumage->2003                              11.25111.25111.21011.25111.25111.254
observation->CRsumage->2004                              9.5539.5539.5619.5539.5539.556
observation->CRsumage->2005                              12.75312.75312.65412.75312.75312.749
observation->CRsumage->2006                              10.31610.31610.31710.31610.31610.317
observation->CRsumage->2007                              13.56213.56213.50413.56213.56213.561
observation->CRsumage->2008                              11.66111.66111.63911.66111.66111.665
observation->CRsumage->2009                              12.00612.00611.96512.00612.00612.002
observation->CRsumage->2010                              11.04811.04811.05511.04811.04811.052
observation->CRsumage->2011                              12.57912.57912.57112.57912.57912.577
observation->CRsumage->2012                              17.22817.22817.14117.22817.22817.230
observation->CRsumage->2013                              11.84311.84311.82211.84311.84311.845
observation->CRsumage->2014                              11.28611.28611.27111.28611.28611.288
observation->CRsumage->2016                              9.8669.8669.8479.8669.8669.867
observation->CRsumage->2018                              11.93111.93111.89511.93111.93111.935
observation->SAsumage->1992                              12.24612.24612.26912.24612.24612.241
observation->SAsumage->1993                              12.47012.47012.50212.47012.47012.483
observation->SAsumage->1994                              10.81110.81110.81810.81110.81110.808
observation->SAsumage->2001                              12.74912.74912.83912.74912.74912.762
observation->SAsumage->2002                              12.20912.20912.25412.20912.20912.216
observation->SAsumage->2003                              13.38613.38613.38613.38613.38613.388
observation->SAsumage->2004                              11.06711.06711.00511.06711.06711.064
observation->SAsumage->2005                              15.27815.27815.38615.27815.27815.280
observation->SAsumage->2006                              14.11214.11214.07814.11214.11214.110
observation->SAsumage->2007                              10.64910.64910.63910.64910.64910.649
observation->SAsumage->2008                              13.77113.77113.83613.77113.77113.766
observation->SAsumage->2009                              15.51315.51315.53015.51315.51315.520
observation->SAsumage->2010                              15.08115.08115.13015.08115.08115.082
observation->SAsumage->2012                              13.43713.43713.47913.43713.43713.439
observation->SAsumage->2013                              11.95411.95411.98211.95411.95411.956
observation->SAsumage->2015                              13.52213.52213.54013.52213.52213.524
observation->SAsumage->2017                              12.49212.49212.47812.49212.49212.487
observation->SAautage->1992                              11.80911.80911.85711.80911.80911.819
observation->SAautage->1996                              10.44910.44910.42610.44910.44910.450
observation->SAautage->1998                              12.80912.80912.83512.80912.80912.810
observation->pspawn_1993                              -6.017-6.017-6.015-6.017-6.017-6.016
observation->pspawn->1992                              -4.848-4.848-4.829-4.848-4.848-4.852
observation->pspawn->1998                              -8.284-8.284-8.300-8.284-8.284-8.291
penalty->CatchMustBeTaken                              0.0000.0000.0000.0000.0000.000
prior->CSacousq->catchability[CSacous].q                            -0.849-0.849-0.839-0.849-0.849-0.847
prior->WCacousq->catchability[WCacous].q                            -1.162-1.162-1.202-1.162-1.162-1.163
prior->CRsumq->catchability[CRsum].q                            -2.155-2.155-2.207-2.155-2.155-2.153
prior->SAsumq->catchability[SAsum].q                            -1.762-1.762-1.557-1.762-1.762-1.760
prior->SAautq->catchability[SAaut].q                            -1.913-1.913-1.762-1.913-1.913-1.911
prior->CR_process_error->observation[CRsumbio].process_error                0.0000.0000.0000.0000.0000.000
prior->SA_process_error->observation[SAsumbio].process_error                0.0000.0000.0000.0000.0000.000
prior->B0_E_with_total_log_b0_prior->parameter_transformation[log_sum_b0].log_total_parameter          0.0000.0000.0000.0000.0000.000
prior->B0_W_with_proportion_prior->parameter_transformation[log_sum_b0].total_proportion_parameter   12.54412.54412.55512.54412.54412.545
prior->M_all->process[Instant_mortality].m{west.sa}                          -1.085-1.085-1.217-1.085-1.085-1.083
prior->Wspsl_shift_param->time_varying[shifted_mu].a                            0.4200.4200.3780.4200.4200.422
prior->YCS_E->process[recruit_E].recruitment_multipliers{1977}-0.624-0.624-0.623-0.624-0.624-0.624
prior->YCS_E->process[recruit_E].recruitment_multipliers{1978}-0.316-0.316-0.319-0.316-0.316-0.314
prior->YCS_E->process[recruit_E].recruitment_multipliers{1979}-0.227-0.227-0.238-0.227-0.227-0.225
prior->YCS_E->process[recruit_E].recruitment_multipliers{1980}0.6540.6540.6150.6540.6540.656
prior->YCS_E->process[recruit_E].recruitment_multipliers{1981}0.0840.0840.0620.0840.0840.086
prior->YCS_E->process[recruit_E].recruitment_multipliers{1982}-0.630-0.630-0.627-0.630-0.630-0.630
prior->YCS_E->process[recruit_E].recruitment_multipliers{1983}-0.619-0.619-0.623-0.619-0.619-0.619
prior->YCS_E->process[recruit_E].recruitment_multipliers{1984}-0.550-0.550-0.542-0.550-0.550-0.551
prior->YCS_E->process[recruit_E].recruitment_multipliers{1985}-0.627-0.627-0.630-0.627-0.627-0.627
prior->YCS_E->process[recruit_E].recruitment_multipliers{1986}-0.591-0.591-0.596-0.591-0.591-0.591
prior->YCS_E->process[recruit_E].recruitment_multipliers{1987}-0.641-0.641-0.642-0.641-0.641-0.641
prior->YCS_E->process[recruit_E].recruitment_multipliers{1988}-0.408-0.408-0.400-0.408-0.408-0.408
prior->YCS_E->process[recruit_E].recruitment_multipliers{1989}0.1420.1420.1350.1420.1420.142
prior->YCS_E->process[recruit_E].recruitment_multipliers{1990}0.0260.0260.0190.0260.0260.025
prior->YCS_E->process[recruit_E].recruitment_multipliers{1991}-0.631-0.631-0.632-0.631-0.631-0.631
prior->YCS_E->process[recruit_E].recruitment_multipliers{1992}0.1590.1590.1580.1590.1590.159
prior->YCS_E->process[recruit_E].recruitment_multipliers{1993}-0.643-0.643-0.643-0.643-0.643-0.643
prior->YCS_E->process[recruit_E].recruitment_multipliers{1994}-0.643-0.643-0.643-0.643-0.643-0.643
prior->YCS_E->process[recruit_E].recruitment_multipliers{1995}-0.643-0.643-0.643-0.643-0.643-0.643
prior->YCS_E->process[recruit_E].recruitment_multipliers{1996}-0.530-0.530-0.525-0.530-0.530-0.531
prior->YCS_E->process[recruit_E].recruitment_multipliers{1997}-0.534-0.534-0.538-0.534-0.534-0.534
prior->YCS_E->process[recruit_E].recruitment_multipliers{1998}-0.574-0.574-0.577-0.574-0.574-0.573
prior->YCS_E->process[recruit_E].recruitment_multipliers{1999}-0.623-0.623-0.622-0.623-0.623-0.623
prior->YCS_E->process[recruit_E].recruitment_multipliers{2000}-0.512-0.512-0.513-0.512-0.512-0.511
prior->YCS_E->process[recruit_E].recruitment_multipliers{2001}2.0142.0142.0142.0142.0142.014
prior->YCS_E->process[recruit_E].recruitment_multipliers{2002}-0.616-0.616-0.614-0.616-0.616-0.616
prior->YCS_E->process[recruit_E].recruitment_multipliers{2003}-0.065-0.065-0.071-0.065-0.065-0.065
prior->YCS_E->process[recruit_E].recruitment_multipliers{2004}-0.543-0.543-0.545-0.543-0.543-0.542
prior->YCS_E->process[recruit_E].recruitment_multipliers{2005}-0.586-0.586-0.585-0.586-0.586-0.586
prior->YCS_E->process[recruit_E].recruitment_multipliers{2006}-0.568-0.568-0.568-0.568-0.568-0.568
prior->YCS_E->process[recruit_E].recruitment_multipliers{2007}-0.579-0.579-0.578-0.579-0.579-0.579
prior->YCS_E->process[recruit_E].recruitment_multipliers{2008}-0.483-0.483-0.482-0.483-0.483-0.483
prior->YCS_E->process[recruit_E].recruitment_multipliers{2009}-0.567-0.567-0.566-0.567-0.567-0.567
prior->YCS_E->process[recruit_E].recruitment_multipliers{2010}-0.643-0.643-0.643-0.643-0.643-0.643
prior->YCS_E->process[recruit_E].recruitment_multipliers{2011}-0.561-0.561-0.562-0.561-0.561-0.561
prior->YCS_E->process[recruit_E].recruitment_multipliers{2012}-0.031-0.031-0.046-0.031-0.031-0.031
prior->YCS_E->process[recruit_E].recruitment_multipliers{2013}-0.408-0.408-0.408-0.408-0.408-0.408
prior->YCS_E->process[recruit_E].recruitment_multipliers{2014}-0.019-0.019-0.023-0.019-0.019-0.019
prior->YCS_E->process[recruit_E].recruitment_multipliers{2015}-0.238-0.238-0.242-0.238-0.238-0.238
prior->YCS_E->process[recruit_E].recruitment_multipliers{2016}-0.317-0.317-0.314-0.317-0.317-0.317
prior->YCS_E->process[recruit_E].recruitment_multipliers{2017}-0.279-0.279-0.302-0.279-0.279-0.284
prior->YCS_E->process[recruit_E].recruitment_multipliers{2018}0.3630.3630.3730.3630.3630.364
prior->YCS_W->process[recruit_W].recruitment_multipliers{1977}-0.616-0.616-0.617-0.616-0.616-0.616
prior->YCS_W->process[recruit_W].recruitment_multipliers{1978}-0.195-0.195-0.184-0.195-0.195-0.195
prior->YCS_W->process[recruit_W].recruitment_multipliers{1979}-0.376-0.376-0.396-0.376-0.376-0.376
prior->YCS_W->process[recruit_W].recruitment_multipliers{1980}-0.396-0.396-0.417-0.396-0.396-0.397
prior->YCS_W->process[recruit_W].recruitment_multipliers{1981}-0.607-0.607-0.612-0.607-0.607-0.607
prior->YCS_W->process[recruit_W].recruitment_multipliers{1982}-0.567-0.567-0.573-0.567-0.567-0.568
prior->YCS_W->process[recruit_W].recruitment_multipliers{1983}-0.502-0.502-0.508-0.502-0.502-0.502
prior->YCS_W->process[recruit_W].recruitment_multipliers{1984}-0.606-0.606-0.607-0.606-0.606-0.606
prior->YCS_W->process[recruit_W].recruitment_multipliers{1985}-0.109-0.109-0.111-0.109-0.109-0.108
prior->YCS_W->process[recruit_W].recruitment_multipliers{1986}-0.163-0.163-0.163-0.163-0.163-0.161
prior->YCS_W->process[recruit_W].recruitment_multipliers{1987}-0.619-0.619-0.620-0.619-0.619-0.619
prior->YCS_W->process[recruit_W].recruitment_multipliers{1988}-0.098-0.098-0.098-0.098-0.098-0.097
prior->YCS_W->process[recruit_W].recruitment_multipliers{1989}0.7880.7880.7820.7880.7880.789
prior->YCS_W->process[recruit_W].recruitment_multipliers{1990}-0.252-0.252-0.255-0.252-0.252-0.251
prior->YCS_W->process[recruit_W].recruitment_multipliers{1991}1.2071.2071.2111.2071.2071.207
prior->YCS_W->process[recruit_W].recruitment_multipliers{1992}1.1971.1971.2041.1971.1971.198
prior->YCS_W->process[recruit_W].recruitment_multipliers{1993}-0.081-0.081-0.080-0.081-0.081-0.081
prior->YCS_W->process[recruit_W].recruitment_multipliers{1994}0.4800.4800.4800.4800.4800.480
prior->YCS_W->process[recruit_W].recruitment_multipliers{1995}-0.643-0.643-0.643-0.643-0.643-0.643
prior->YCS_W->process[recruit_W].recruitment_multipliers{1996}0.0140.0140.0200.0140.0140.014
prior->YCS_W->process[recruit_W].recruitment_multipliers{1997}-0.410-0.410-0.413-0.410-0.410-0.409
prior->YCS_W->process[recruit_W].recruitment_multipliers{1998}-0.301-0.301-0.306-0.301-0.301-0.301
prior->YCS_W->process[recruit_W].recruitment_multipliers{1999}-0.466-0.466-0.471-0.466-0.466-0.467
prior->YCS_W->process[recruit_W].recruitment_multipliers{2000}-0.322-0.322-0.334-0.322-0.322-0.323
prior->YCS_W->process[recruit_W].recruitment_multipliers{2001}2.0142.0142.0142.0142.0142.014
prior->YCS_W->process[recruit_W].recruitment_multipliers{2002}-0.643-0.643-0.643-0.643-0.643-0.643
prior->YCS_W->process[recruit_W].recruitment_multipliers{2003}0.8560.8560.8460.8560.8560.855
prior->YCS_W->process[recruit_W].recruitment_multipliers{2004}-0.222-0.222-0.222-0.222-0.222-0.222
prior->YCS_W->process[recruit_W].recruitment_multipliers{2005}-0.612-0.612-0.612-0.612-0.612-0.612
prior->YCS_W->process[recruit_W].recruitment_multipliers{2006}-0.570-0.570-0.571-0.570-0.570-0.570
prior->YCS_W->process[recruit_W].recruitment_multipliers{2007}-0.574-0.574-0.576-0.574-0.574-0.574
prior->YCS_W->process[recruit_W].recruitment_multipliers{2008}-0.280-0.280-0.279-0.280-0.280-0.280
prior->YCS_W->process[recruit_W].recruitment_multipliers{2009}-0.438-0.438-0.436-0.438-0.438-0.438
prior->YCS_W->process[recruit_W].recruitment_multipliers{2010}-0.464-0.464-0.463-0.464-0.464-0.464
prior->YCS_W->process[recruit_W].recruitment_multipliers{2011}-0.514-0.514-0.508-0.514-0.514-0.514
prior->YCS_W->process[recruit_W].recruitment_multipliers{2012}0.0710.0710.0780.0710.0710.070
prior->YCS_W->process[recruit_W].recruitment_multipliers{2013}0.0310.0310.0430.0310.0310.030
prior->YCS_W->process[recruit_W].recruitment_multipliers{2014}-0.050-0.050-0.059-0.050-0.050-0.049
prior->YCS_W->process[recruit_W].recruitment_multipliers{2015}-0.489-0.489-0.490-0.489-0.489-0.488
prior->YCS_W->process[recruit_W].recruitment_multipliers{2016}1.7301.7301.7421.7301.7301.727
prior->YCS_W->process[recruit_W].recruitment_multipliers{2017}1.6811.6811.6871.6811.6811.684
prior->YCS_W->process[recruit_W].recruitment_multipliers{2018}0.3630.3630.3730.3630.3630.364
prior->sel_Whome->selectivity[sel_Whome].v{1}                         0.0000.0000.0000.0000.0000.000
prior->sel_Whome->selectivity[sel_Whome].v{2}                         0.0000.0000.0000.0000.0000.000
prior->sel_Whome->selectivity[sel_Whome].v{3}                         0.0000.0000.0000.0000.0000.000
prior->sel_Whome->selectivity[sel_Whome].v{4}                         0.0000.0000.0000.0000.0000.000
prior->sel_Whome->selectivity[sel_Whome].v{5}                         0.0000.0000.0000.0000.0000.000
prior->sel_Whome->selectivity[sel_Whome].v{6}                         0.0000.0000.0000.0000.0000.000
prior->sel_Whome->selectivity[sel_Whome].v{7}                         0.0000.0000.0000.0000.0000.000
prior->sel_Espmg_male->selectivity[sel_Espmg].v{1}                         0.0000.0000.0000.0000.0000.000
prior->sel_Espmg_male->selectivity[sel_Espmg].v{2}                         0.0000.0000.0000.0000.0000.000
prior->sel_Espmg_male->selectivity[sel_Espmg].v{3}                         0.0000.0000.0000.0000.0000.000
prior->sel_Espmg_male->selectivity[sel_Espmg].v{4}                         0.0000.0000.0000.0000.0000.000
prior->sel_Espmg_male->selectivity[sel_Espmg].v{5}                         0.0000.0000.0000.0000.0000.000
prior->sel_Espmg_male->selectivity[sel_Espmg].v{6}                         0.0000.0000.0000.0000.0000.000
prior->sel_Espmg_male->selectivity[sel_Espmg].v{7}                         0.0000.0000.0000.0000.0000.000
prior->sel_Espmg_male->selectivity[sel_Espmg].v{8}                         0.0000.0000.0000.0000.0000.000
prior->sel_Wspmg_male->selectivity[sel_Wspmg].v{1}                         0.0000.0000.0000.0000.0000.000
prior->sel_Wspmg_male->selectivity[sel_Wspmg].v{2}                         0.0000.0000.0000.0000.0000.000
prior->sel_Wspmg_male->selectivity[sel_Wspmg].v{3}                         0.0000.0000.0000.0000.0000.000
prior->sel_Wspmg_male->selectivity[sel_Wspmg].v{4}                         0.0000.0000.0000.0000.0000.000
prior->sel_Wspmg_male->selectivity[sel_Wspmg].v{5}                         0.0000.0000.0000.0000.0000.000
prior->sel_Wspmg_male->selectivity[sel_Wspmg].v{6}                         0.0000.0000.0000.0000.0000.000
prior->sel_Wspmg_male->selectivity[sel_Wspmg].v{7}                         0.0000.0000.0000.0000.0000.000
prior->sel_Wspmg_male->selectivity[sel_Wspmg].v{8}                         0.0000.0000.0000.0000.0000.000
prior->Enspsl_mu->selectivity[Enspsl].mu                           0.0000.0000.0000.0000.0000.000
prior->Enspsl_s_l->selectivity[Enspsl].sigma_l                      0.0000.0000.0000.0000.0000.000
prior->Enspsl_s_r->selectivity[Enspsl].sigma_r                      0.0000.0000.0000.0000.0000.000
prior->Wnspsl_mu->selectivity[Wnspsl].mu                           0.0000.0000.0000.0000.0000.000
prior->Wnspsl_s_l->selectivity[Wnspsl].sigma_l                      0.0000.0000.0000.0000.0000.000
prior->Wnspsl_s_r->selectivity[Wnspsl].sigma_r                      0.0000.0000.0000.0000.0000.000
prior->Espsl_mu->selectivity[Espsl].mu                           0.0000.0000.0000.0000.0000.000
prior->Espsl_s_l->selectivity[Espsl].sigma_l                      0.0000.0000.0000.0000.0000.000
prior->Espsl_s_r->selectivity[Espsl].sigma_r                      0.0000.0000.0000.0000.0000.000
prior->CRsl_mu->selectivity[CRsl].mu                           0.0000.0000.0000.0000.0000.000
prior->CRsl_s_l->selectivity[CRsl].sigma_l                      0.0000.0000.0000.0000.0000.000
prior->CRsl_s_r->selectivity[CRsl].sigma_r                      0.0000.0000.0000.0000.0000.000
prior->SAsl_mu->selectivity[SAsl].mu                           0.0000.0000.0000.0000.0000.000
prior->SAsl_s_l->selectivity[SAsl].sigma_l                      0.0000.0000.0000.0000.0000.000
prior->SAsl_s_r->selectivity[SAsl].sigma_r                      0.0000.0000.0000.0000.0000.000
additional_prior->YCS.eq.16                           0.0000.0000.0000.0000.0000.000
additional_prior->sp.migr                         0.0090.0090.0130.0090.0090.009
jacobian->log_sum_b0                              0.0000.0000.0000.0000.0000.000
total_score                              1946.8101946.8101946.5401946.8101946.8101946.800

## [1] "CASAL base model convergence information"
## [1] "Minimiser achieved convergence after 627 quasi-Newton iterations using 696 objective function evaluations"
## [1] ""
## [1] "CASAL sensitivity 1 model convergence information"
## [1] "Minimiser achieved convergence after 648 quasi-Newton iterations using 723 objective function evaluations"
## [1] ""
## [1] "Casal2 betadiff_casal_flags_on model convergence information"
## [1] "fmm: have converged: t = 3.59957e-07 f = 1946.81"
## [2] "Successful convergence in optimise"              
## [1] ""
## [1] "Casal2 betadiff_casal_flags_off model convergence information"
## [1] "fmm: have converged: t = 3.59957e-07 f = 1946.81"
## [2] "Successful convergence in optimise"              
## [1] ""
## [1] "Casal2 betadiff_casal_flags_on_low_tol model convergence information"
## [1] "fmm: step size too small. Indicates successful convergence (though this is not the textbook ideal convergence situation)"
## [2] "Successful convergence in optimise"                                                                                      
## [1] ""
## [1] "Casal2 adolc_casal_flags_on model convergence information"
## character(0)
## [1] ""
## [1] "Casal2 adolc_casal_flags_off model convergence information"
## character(0)
## [1] ""
## [1] "Casal2 adolc_casal_flags_on_low_tol model convergence information"
## [1] "[IMPORTANT] FMM: Small step size convergence"
## [2] "FMM: Small step size convergence"
## [1] "CASAL model warnings"
##                  parameter estimate lower.bound upper.bound
## 1   recruitment[E].YCS[25]     0.06        0.06         8.6
## 2   recruitment[W].YCS[25]     0.06        0.06         8.6
## 3 selectivity[CRsl].all[1]        1           1          17
## 4 selectivity[CRsl].all[2]        1           1          50
## [1] ""
## [1] "CASAL sensitivity 1 model warnings"
##                  parameter estimate lower.bound upper.bound
## 1   recruitment[E].YCS[25]     0.06        0.06         8.6
## 2   recruitment[W].YCS[25]     0.06        0.06         8.6
## 3 selectivity[CRsl].all[1]        1           1          17
## 4 selectivity[CRsl].all[2]        1           1          50
## [1] ""
## [1] "Casal2 betadiff_casal_flags_on model warnings"
##  [1] "obs sum total (1) for year (1989) doesn't sum to 1.0"                                                                                                                            
##  [2] "obs sum total (1) for year (1990) doesn't sum to 1.0"                                                                                                                            
##  [3] "obs sum total (0.999999) for year (1991) doesn't sum to 1.0"                                                                                                                     
##  [4] "obs sum total (1) for year (1994) doesn't sum to 1.0"                                                                                                                            
##  [5] "obs sum total (1) for year (1995) doesn't sum to 1.0"                                                                                                                            
##  [6] "obs sum total (1) for year (1996) doesn't sum to 1.0"                                                                                                                            
##  [7] "obs sum total (1) for year (1998) doesn't sum to 1.0"                                                                                                                            
##  [8] "obs sum total (1) for year (2000) doesn't sum to 1.0"                                                                                                                            
##  [9] "obs sum total (0.999999) for year (2001) doesn't sum to 1.0"                                                                                                                     
## [10] "obs sum total (1) for year (2002) doesn't sum to 1.0"                                                                                                                            
## [11] "obs sum total (1) for year (2003) doesn't sum to 1.0"                                                                                                                            
## [12] "obs sum total (0.999998) for year (2004) doesn't sum to 1.0"                                                                                                                     
## [13] "obs sum total (0.999999) for year (2005) doesn't sum to 1.0"                                                                                                                     
## [14] "obs sum total (0.999999) for year (2007) doesn't sum to 1.0"                                                                                                                     
## [15] "obs sum total (1) for year (2008) doesn't sum to 1.0"                                                                                                                            
## [16] "obs sum total (1) for year (2009) doesn't sum to 1.0"                                                                                                                            
## [17] "obs sum total (0.999999) for year (2014) doesn't sum to 1.0"                                                                                                                     
## [18] "obs sum total (1) for year (2015) doesn't sum to 1.0"                                                                                                                            
## [19] "obs sum total (1) for year (2017) doesn't sum to 1.0"                                                                                                                            
## [20] "obs sum total (1) for year (1988) doesn't sum to 1.0"                                                                                                                            
## [21] "obs sum total (0.999999) for year (1989) doesn't sum to 1.0"                                                                                                                     
## [22] "obs sum total (0.999999) for year (1990) doesn't sum to 1.0"                                                                                                                     
## [23] "obs sum total (0.999998) for year (1992) doesn't sum to 1.0"                                                                                                                     
## [24] "obs sum total (0.999999) for year (1996) doesn't sum to 1.0"                                                                                                                     
## [25] "obs sum total (1) for year (1997) doesn't sum to 1.0"                                                                                                                            
## [26] "obs sum total (1) for year (1999) doesn't sum to 1.0"                                                                                                                            
## [27] "obs sum total (1) for year (2002) doesn't sum to 1.0"                                                                                                                            
## [28] "obs sum total (0.999999) for year (2003) doesn't sum to 1.0"                                                                                                                     
## [29] "obs sum total (0.999999) for year (2004) doesn't sum to 1.0"                                                                                                                     
## [30] "obs sum total (1) for year (2005) doesn't sum to 1.0"                                                                                                                            
## [31] "obs sum total (0.999999) for year (2007) doesn't sum to 1.0"                                                                                                                     
## [32] "obs sum total (0.999998) for year (2008) doesn't sum to 1.0"                                                                                                                     
## [33] "obs sum total (0.999999) for year (2009) doesn't sum to 1.0"                                                                                                                     
## [34] "obs sum total (1) for year (2015) doesn't sum to 1.0"                                                                                                                            
## [35] "obs sum total (1) for year (1992) doesn't sum to 1.0"                                                                                                                            
## [36] "obs sum total (0.999999) for year (1998) doesn't sum to 1.0"                                                                                                                     
## [37] "obs sum total (0.999999) for year (1999) doesn't sum to 1.0"                                                                                                                     
## [38] "obs sum total (1) for year (2001) doesn't sum to 1.0"                                                                                                                            
## [39] "obs sum total (1) for year (2004) doesn't sum to 1.0"                                                                                                                            
## [40] "obs sum total (1) for year (2005) doesn't sum to 1.0"                                                                                                                            
## [41] "obs sum total (0.999999) for year (2006) doesn't sum to 1.0"                                                                                                                     
## [42] "obs sum total (1) for year (2008) doesn't sum to 1.0"                                                                                                                            
## [43] "obs sum total (0.999999) for year (2010) doesn't sum to 1.0"                                                                                                                     
## [44] "obs sum total (0.999999) for year (2011) doesn't sum to 1.0"                                                                                                                     
## [45] "obs sum total (0.999999) for year (2012) doesn't sum to 1.0"                                                                                                                     
## [46] "obs sum total (0.999998) for year (2016) doesn't sum to 1.0"                                                                                                                     
## [47] "obs sum total (0.999999) for year (1994) doesn't sum to 1.0"                                                                                                                     
## [48] "obs sum total (0.999999) for year (1996) doesn't sum to 1.0"                                                                                                                     
## [49] "obs sum total (0.999999) for year (2002) doesn't sum to 1.0"                                                                                                                     
## [50] "obs sum total (1) for year (2003) doesn't sum to 1.0"                                                                                                                            
## [51] "obs sum total (0.999999) for year (2004) doesn't sum to 1.0"                                                                                                                     
## [52] "obs sum total (0.999999) for year (2006) doesn't sum to 1.0"                                                                                                                     
## [53] "obs sum total (0.999999) for year (2008) doesn't sum to 1.0"                                                                                                                     
## [54] "obs sum total (1) for year (2011) doesn't sum to 1.0"                                                                                                                            
## [55] "obs sum total (0.999999) for year (2012) doesn't sum to 1.0"                                                                                                                     
## [56] "obs sum total (1) for year (2013) doesn't sum to 1.0"                                                                                                                            
## [57] "obs sum total (1) for year (1992) doesn't sum to 1.0"                                                                                                                            
## [58] "obs sum total (0.999999) for year (1995) doesn't sum to 1.0"                                                                                                                     
## [59] "obs sum total (0.999998) for year (2002) doesn't sum to 1.0"                                                                                                                     
## [60] "obs sum total (0.999999) for year (2004) doesn't sum to 1.0"                                                                                                                     
## [61] "obs sum total (0.999999) for year (2006) doesn't sum to 1.0"                                                                                                                     
## [62] "obs sum total (0.999999) for year (2008) doesn't sum to 1.0"                                                                                                                     
## [63] "obs sum total (1) for year (2009) doesn't sum to 1.0"                                                                                                                            
## [64] "obs sum total (0.999999) for year (2010) doesn't sum to 1.0"                                                                                                                     
## [65] "obs sum total (1) for year (2013) doesn't sum to 1.0"                                                                                                                            
## [66] "obs sum total (1) for year (2016) doesn't sum to 1.0"                                                                                                                            
## [67] "obs sum total (1) for year (2018) doesn't sum to 1.0"                                                                                                                            
## [68] "obs sum total (0.999999) for year (1992) doesn't sum to 1.0"                                                                                                                     
## [69] "obs sum total (0.999999) for year (1993) doesn't sum to 1.0"                                                                                                                     
## [70] "obs sum total (0.999999) for year (2001) doesn't sum to 1.0"                                                                                                                     
## [71] "obs sum total (0.999998) for year (2004) doesn't sum to 1.0"                                                                                                                     
## [72] "obs sum total (0.999999) for year (2006) doesn't sum to 1.0"                                                                                                                     
## [73] "obs sum total (0.999998) for year (2007) doesn't sum to 1.0"                                                                                                                     
## [74] "obs sum total (0.999999) for year (2008) doesn't sum to 1.0"                                                                                                                     
## [75] "obs sum total (0.999999) for year (2009) doesn't sum to 1.0"                                                                                                                     
## [76] "obs sum total (0.999999) for year (2010) doesn't sum to 1.0"                                                                                                                     
## [77] "obs sum total (0.999999) for year (2015) doesn't sum to 1.0"                                                                                                                     
## [78] "obs sum total (1) for year (2017) doesn't sum to 1.0"                                                                                                                            
## [79] "obs sum total (1) for year (1998) doesn't sum to 1.0"                                                                                                                            
## [80] "Estimates were removed because of matching lower and upper bounds. Originally had 134 estimates, now have 133"                                                                   
## [81] "Found an @estimate block for selectivity[Wspsl].mu. There are only a few time-varying types such as exogenous where this is okay. Please check this is a sensible configuration."
## [82] "estimated parameter 'process[recruit_E].recruitment_multipliers{2001}' was within 0.001 of lower bound 0.06"                                                                     
## [83] "estimated parameter 'process[recruit_W].recruitment_multipliers{2001}' was within 0.001 of lower bound 0.06"                                                                     
## [84] "estimated parameter 'selectivity[sel_Whome].v{7}' was within 0.001 of upper bound 1"                                                                                             
## [85] "estimated parameter 'selectivity[Enspsl].sigma_r' was within 0.001 of upper bound 50"                                                                                            
## [86] "estimated parameter 'selectivity[Wnspsl].sigma_r' was within 0.001 of upper bound 50"                                                                                            
## [87] "estimated parameter 'selectivity[CRsl].mu' was within 0.001 of lower bound 1"                                                                                                    
## [88] "estimated parameter 'selectivity[SAsl].sigma_r' was within 0.001 of lower bound 1"                                                                                               
## [89] "estimated parameter 'process[recruit_E].recruitment_multipliers{2001}' was within 0.001 of lower bound 0.06"                                                                     
## [90] "estimated parameter 'process[recruit_W].recruitment_multipliers{2001}' was within 0.001 of lower bound 0.06"                                                                     
## [91] "estimated parameter 'selectivity[sel_Whome].v{7}' was within 0.001 of upper bound 1"                                                                                             
## [92] "estimated parameter 'selectivity[Enspsl].sigma_r' was within 0.001 of upper bound 50"                                                                                            
## [93] "estimated parameter 'selectivity[Wnspsl].sigma_r' was within 0.001 of upper bound 50"                                                                                            
## [94] "estimated parameter 'selectivity[CRsl].mu' was within 0.001 of lower bound 1"                                                                                                    
## [95] "estimated parameter 'selectivity[SAsl].sigma_r' was within 0.001 of lower bound 1"                                                                                               
## [1] ""
## [1] "Casal2 betadiff_casal_flags_off model warnings"
##  [1] "obs sum total (1) for year (1989) doesn't sum to 1.0"                                                                                                                            
##  [2] "obs sum total (1) for year (1990) doesn't sum to 1.0"                                                                                                                            
##  [3] "obs sum total (0.999999) for year (1991) doesn't sum to 1.0"                                                                                                                     
##  [4] "obs sum total (1) for year (1994) doesn't sum to 1.0"                                                                                                                            
##  [5] "obs sum total (1) for year (1995) doesn't sum to 1.0"                                                                                                                            
##  [6] "obs sum total (1) for year (1996) doesn't sum to 1.0"                                                                                                                            
##  [7] "obs sum total (1) for year (1998) doesn't sum to 1.0"                                                                                                                            
##  [8] "obs sum total (1) for year (2000) doesn't sum to 1.0"                                                                                                                            
##  [9] "obs sum total (0.999999) for year (2001) doesn't sum to 1.0"                                                                                                                     
## [10] "obs sum total (1) for year (2002) doesn't sum to 1.0"                                                                                                                            
## [11] "obs sum total (1) for year (2003) doesn't sum to 1.0"                                                                                                                            
## [12] "obs sum total (0.999998) for year (2004) doesn't sum to 1.0"                                                                                                                     
## [13] "obs sum total (0.999999) for year (2005) doesn't sum to 1.0"                                                                                                                     
## [14] "obs sum total (0.999999) for year (2007) doesn't sum to 1.0"                                                                                                                     
## [15] "obs sum total (1) for year (2008) doesn't sum to 1.0"                                                                                                                            
## [16] "obs sum total (1) for year (2009) doesn't sum to 1.0"                                                                                                                            
## [17] "obs sum total (0.999999) for year (2014) doesn't sum to 1.0"                                                                                                                     
## [18] "obs sum total (1) for year (2015) doesn't sum to 1.0"                                                                                                                            
## [19] "obs sum total (1) for year (2017) doesn't sum to 1.0"                                                                                                                            
## [20] "obs sum total (1) for year (1988) doesn't sum to 1.0"                                                                                                                            
## [21] "obs sum total (0.999999) for year (1989) doesn't sum to 1.0"                                                                                                                     
## [22] "obs sum total (0.999999) for year (1990) doesn't sum to 1.0"                                                                                                                     
## [23] "obs sum total (0.999998) for year (1992) doesn't sum to 1.0"                                                                                                                     
## [24] "obs sum total (0.999999) for year (1996) doesn't sum to 1.0"                                                                                                                     
## [25] "obs sum total (1) for year (1997) doesn't sum to 1.0"                                                                                                                            
## [26] "obs sum total (1) for year (1999) doesn't sum to 1.0"                                                                                                                            
## [27] "obs sum total (1) for year (2002) doesn't sum to 1.0"                                                                                                                            
## [28] "obs sum total (0.999999) for year (2003) doesn't sum to 1.0"                                                                                                                     
## [29] "obs sum total (0.999999) for year (2004) doesn't sum to 1.0"                                                                                                                     
## [30] "obs sum total (1) for year (2005) doesn't sum to 1.0"                                                                                                                            
## [31] "obs sum total (0.999999) for year (2007) doesn't sum to 1.0"                                                                                                                     
## [32] "obs sum total (0.999998) for year (2008) doesn't sum to 1.0"                                                                                                                     
## [33] "obs sum total (0.999999) for year (2009) doesn't sum to 1.0"                                                                                                                     
## [34] "obs sum total (1) for year (2015) doesn't sum to 1.0"                                                                                                                            
## [35] "obs sum total (1) for year (1992) doesn't sum to 1.0"                                                                                                                            
## [36] "obs sum total (0.999999) for year (1998) doesn't sum to 1.0"                                                                                                                     
## [37] "obs sum total (0.999999) for year (1999) doesn't sum to 1.0"                                                                                                                     
## [38] "obs sum total (1) for year (2001) doesn't sum to 1.0"                                                                                                                            
## [39] "obs sum total (1) for year (2004) doesn't sum to 1.0"                                                                                                                            
## [40] "obs sum total (1) for year (2005) doesn't sum to 1.0"                                                                                                                            
## [41] "obs sum total (0.999999) for year (2006) doesn't sum to 1.0"                                                                                                                     
## [42] "obs sum total (1) for year (2008) doesn't sum to 1.0"                                                                                                                            
## [43] "obs sum total (0.999999) for year (2010) doesn't sum to 1.0"                                                                                                                     
## [44] "obs sum total (0.999999) for year (2011) doesn't sum to 1.0"                                                                                                                     
## [45] "obs sum total (0.999999) for year (2012) doesn't sum to 1.0"                                                                                                                     
## [46] "obs sum total (0.999998) for year (2016) doesn't sum to 1.0"                                                                                                                     
## [47] "obs sum total (0.999999) for year (1994) doesn't sum to 1.0"                                                                                                                     
## [48] "obs sum total (0.999999) for year (1996) doesn't sum to 1.0"                                                                                                                     
## [49] "obs sum total (0.999999) for year (2002) doesn't sum to 1.0"                                                                                                                     
## [50] "obs sum total (1) for year (2003) doesn't sum to 1.0"                                                                                                                            
## [51] "obs sum total (0.999999) for year (2004) doesn't sum to 1.0"                                                                                                                     
## [52] "obs sum total (0.999999) for year (2006) doesn't sum to 1.0"                                                                                                                     
## [53] "obs sum total (0.999999) for year (2008) doesn't sum to 1.0"                                                                                                                     
## [54] "obs sum total (1) for year (2011) doesn't sum to 1.0"                                                                                                                            
## [55] "obs sum total (0.999999) for year (2012) doesn't sum to 1.0"                                                                                                                     
## [56] "obs sum total (1) for year (2013) doesn't sum to 1.0"                                                                                                                            
## [57] "obs sum total (1) for year (1992) doesn't sum to 1.0"                                                                                                                            
## [58] "obs sum total (0.999999) for year (1995) doesn't sum to 1.0"                                                                                                                     
## [59] "obs sum total (0.999998) for year (2002) doesn't sum to 1.0"                                                                                                                     
## [60] "obs sum total (0.999999) for year (2004) doesn't sum to 1.0"                                                                                                                     
## [61] "obs sum total (0.999999) for year (2006) doesn't sum to 1.0"                                                                                                                     
## [62] "obs sum total (0.999999) for year (2008) doesn't sum to 1.0"                                                                                                                     
## [63] "obs sum total (1) for year (2009) doesn't sum to 1.0"                                                                                                                            
## [64] "obs sum total (0.999999) for year (2010) doesn't sum to 1.0"                                                                                                                     
## [65] "obs sum total (1) for year (2013) doesn't sum to 1.0"                                                                                                                            
## [66] "obs sum total (1) for year (2016) doesn't sum to 1.0"                                                                                                                            
## [67] "obs sum total (1) for year (2018) doesn't sum to 1.0"                                                                                                                            
## [68] "obs sum total (0.999999) for year (1992) doesn't sum to 1.0"                                                                                                                     
## [69] "obs sum total (0.999999) for year (1993) doesn't sum to 1.0"                                                                                                                     
## [70] "obs sum total (0.999999) for year (2001) doesn't sum to 1.0"                                                                                                                     
## [71] "obs sum total (0.999998) for year (2004) doesn't sum to 1.0"                                                                                                                     
## [72] "obs sum total (0.999999) for year (2006) doesn't sum to 1.0"                                                                                                                     
## [73] "obs sum total (0.999998) for year (2007) doesn't sum to 1.0"                                                                                                                     
## [74] "obs sum total (0.999999) for year (2008) doesn't sum to 1.0"                                                                                                                     
## [75] "obs sum total (0.999999) for year (2009) doesn't sum to 1.0"                                                                                                                     
## [76] "obs sum total (0.999999) for year (2010) doesn't sum to 1.0"                                                                                                                     
## [77] "obs sum total (0.999999) for year (2015) doesn't sum to 1.0"                                                                                                                     
## [78] "obs sum total (1) for year (2017) doesn't sum to 1.0"                                                                                                                            
## [79] "obs sum total (1) for year (1998) doesn't sum to 1.0"                                                                                                                            
## [80] "Estimates were removed because of matching lower and upper bounds. Originally had 134 estimates, now have 133"                                                                   
## [81] "Found an @estimate block for selectivity[Wspsl].mu. There are only a few time-varying types such as exogenous where this is okay. Please check this is a sensible configuration."
## [82] "estimated parameter 'process[recruit_E].recruitment_multipliers{2001}' was within 0.001 of lower bound 0.06"                                                                     
## [83] "estimated parameter 'process[recruit_W].recruitment_multipliers{2001}' was within 0.001 of lower bound 0.06"                                                                     
## [84] "estimated parameter 'selectivity[sel_Whome].v{7}' was within 0.001 of upper bound 1"                                                                                             
## [85] "estimated parameter 'selectivity[Enspsl].sigma_r' was within 0.001 of upper bound 50"                                                                                            
## [86] "estimated parameter 'selectivity[Wnspsl].sigma_r' was within 0.001 of upper bound 50"                                                                                            
## [87] "estimated parameter 'selectivity[CRsl].mu' was within 0.001 of lower bound 1"                                                                                                    
## [88] "estimated parameter 'selectivity[SAsl].sigma_r' was within 0.001 of lower bound 1"                                                                                               
## [89] "estimated parameter 'process[recruit_E].recruitment_multipliers{2001}' was within 0.001 of lower bound 0.06"                                                                     
## [90] "estimated parameter 'process[recruit_W].recruitment_multipliers{2001}' was within 0.001 of lower bound 0.06"                                                                     
## [91] "estimated parameter 'selectivity[sel_Whome].v{7}' was within 0.001 of upper bound 1"                                                                                             
## [92] "estimated parameter 'selectivity[Enspsl].sigma_r' was within 0.001 of upper bound 50"                                                                                            
## [93] "estimated parameter 'selectivity[Wnspsl].sigma_r' was within 0.001 of upper bound 50"                                                                                            
## [94] "estimated parameter 'selectivity[CRsl].mu' was within 0.001 of lower bound 1"                                                                                                    
## [95] "estimated parameter 'selectivity[SAsl].sigma_r' was within 0.001 of lower bound 1"                                                                                               
## [1] ""
## [1] "Casal2 betadiff_casal_flags_on_low_tol model warnings"
##  [1] "obs sum total (1) for year (1989) doesn't sum to 1.0"                                                                                                                            
##  [2] "obs sum total (1) for year (1990) doesn't sum to 1.0"                                                                                                                            
##  [3] "obs sum total (0.999999) for year (1991) doesn't sum to 1.0"                                                                                                                     
##  [4] "obs sum total (1) for year (1994) doesn't sum to 1.0"                                                                                                                            
##  [5] "obs sum total (1) for year (1995) doesn't sum to 1.0"                                                                                                                            
##  [6] "obs sum total (1) for year (1996) doesn't sum to 1.0"                                                                                                                            
##  [7] "obs sum total (1) for year (1998) doesn't sum to 1.0"                                                                                                                            
##  [8] "obs sum total (1) for year (2000) doesn't sum to 1.0"                                                                                                                            
##  [9] "obs sum total (0.999999) for year (2001) doesn't sum to 1.0"                                                                                                                     
## [10] "obs sum total (1) for year (2002) doesn't sum to 1.0"                                                                                                                            
## [11] "obs sum total (1) for year (2003) doesn't sum to 1.0"                                                                                                                            
## [12] "obs sum total (0.999998) for year (2004) doesn't sum to 1.0"                                                                                                                     
## [13] "obs sum total (0.999999) for year (2005) doesn't sum to 1.0"                                                                                                                     
## [14] "obs sum total (0.999999) for year (2007) doesn't sum to 1.0"                                                                                                                     
## [15] "obs sum total (1) for year (2008) doesn't sum to 1.0"                                                                                                                            
## [16] "obs sum total (1) for year (2009) doesn't sum to 1.0"                                                                                                                            
## [17] "obs sum total (0.999999) for year (2014) doesn't sum to 1.0"                                                                                                                     
## [18] "obs sum total (1) for year (2015) doesn't sum to 1.0"                                                                                                                            
## [19] "obs sum total (1) for year (2017) doesn't sum to 1.0"                                                                                                                            
## [20] "obs sum total (1) for year (1988) doesn't sum to 1.0"                                                                                                                            
## [21] "obs sum total (0.999999) for year (1989) doesn't sum to 1.0"                                                                                                                     
## [22] "obs sum total (0.999999) for year (1990) doesn't sum to 1.0"                                                                                                                     
## [23] "obs sum total (0.999998) for year (1992) doesn't sum to 1.0"                                                                                                                     
## [24] "obs sum total (0.999999) for year (1996) doesn't sum to 1.0"                                                                                                                     
## [25] "obs sum total (1) for year (1997) doesn't sum to 1.0"                                                                                                                            
## [26] "obs sum total (1) for year (1999) doesn't sum to 1.0"                                                                                                                            
## [27] "obs sum total (1) for year (2002) doesn't sum to 1.0"                                                                                                                            
## [28] "obs sum total (0.999999) for year (2003) doesn't sum to 1.0"                                                                                                                     
## [29] "obs sum total (0.999999) for year (2004) doesn't sum to 1.0"                                                                                                                     
## [30] "obs sum total (1) for year (2005) doesn't sum to 1.0"                                                                                                                            
## [31] "obs sum total (0.999999) for year (2007) doesn't sum to 1.0"                                                                                                                     
## [32] "obs sum total (0.999998) for year (2008) doesn't sum to 1.0"                                                                                                                     
## [33] "obs sum total (0.999999) for year (2009) doesn't sum to 1.0"                                                                                                                     
## [34] "obs sum total (1) for year (2015) doesn't sum to 1.0"                                                                                                                            
## [35] "obs sum total (1) for year (1992) doesn't sum to 1.0"                                                                                                                            
## [36] "obs sum total (0.999999) for year (1998) doesn't sum to 1.0"                                                                                                                     
## [37] "obs sum total (0.999999) for year (1999) doesn't sum to 1.0"                                                                                                                     
## [38] "obs sum total (1) for year (2001) doesn't sum to 1.0"                                                                                                                            
## [39] "obs sum total (1) for year (2004) doesn't sum to 1.0"                                                                                                                            
## [40] "obs sum total (1) for year (2005) doesn't sum to 1.0"                                                                                                                            
## [41] "obs sum total (0.999999) for year (2006) doesn't sum to 1.0"                                                                                                                     
## [42] "obs sum total (1) for year (2008) doesn't sum to 1.0"                                                                                                                            
## [43] "obs sum total (0.999999) for year (2010) doesn't sum to 1.0"                                                                                                                     
## [44] "obs sum total (0.999999) for year (2011) doesn't sum to 1.0"                                                                                                                     
## [45] "obs sum total (0.999999) for year (2012) doesn't sum to 1.0"                                                                                                                     
## [46] "obs sum total (0.999998) for year (2016) doesn't sum to 1.0"                                                                                                                     
## [47] "obs sum total (0.999999) for year (1994) doesn't sum to 1.0"                                                                                                                     
## [48] "obs sum total (0.999999) for year (1996) doesn't sum to 1.0"                                                                                                                     
## [49] "obs sum total (0.999999) for year (2002) doesn't sum to 1.0"                                                                                                                     
## [50] "obs sum total (1) for year (2003) doesn't sum to 1.0"                                                                                                                            
## [51] "obs sum total (0.999999) for year (2004) doesn't sum to 1.0"                                                                                                                     
## [52] "obs sum total (0.999999) for year (2006) doesn't sum to 1.0"                                                                                                                     
## [53] "obs sum total (0.999999) for year (2008) doesn't sum to 1.0"                                                                                                                     
## [54] "obs sum total (1) for year (2011) doesn't sum to 1.0"                                                                                                                            
## [55] "obs sum total (0.999999) for year (2012) doesn't sum to 1.0"                                                                                                                     
## [56] "obs sum total (1) for year (2013) doesn't sum to 1.0"                                                                                                                            
## [57] "obs sum total (1) for year (1992) doesn't sum to 1.0"                                                                                                                            
## [58] "obs sum total (0.999999) for year (1995) doesn't sum to 1.0"                                                                                                                     
## [59] "obs sum total (0.999998) for year (2002) doesn't sum to 1.0"                                                                                                                     
## [60] "obs sum total (0.999999) for year (2004) doesn't sum to 1.0"                                                                                                                     
## [61] "obs sum total (0.999999) for year (2006) doesn't sum to 1.0"                                                                                                                     
## [62] "obs sum total (0.999999) for year (2008) doesn't sum to 1.0"                                                                                                                     
## [63] "obs sum total (1) for year (2009) doesn't sum to 1.0"                                                                                                                            
## [64] "obs sum total (0.999999) for year (2010) doesn't sum to 1.0"                                                                                                                     
## [65] "obs sum total (1) for year (2013) doesn't sum to 1.0"                                                                                                                            
## [66] "obs sum total (1) for year (2016) doesn't sum to 1.0"                                                                                                                            
## [67] "obs sum total (1) for year (2018) doesn't sum to 1.0"                                                                                                                            
## [68] "obs sum total (0.999999) for year (1992) doesn't sum to 1.0"                                                                                                                     
## [69] "obs sum total (0.999999) for year (1993) doesn't sum to 1.0"                                                                                                                     
## [70] "obs sum total (0.999999) for year (2001) doesn't sum to 1.0"                                                                                                                     
## [71] "obs sum total (0.999998) for year (2004) doesn't sum to 1.0"                                                                                                                     
## [72] "obs sum total (0.999999) for year (2006) doesn't sum to 1.0"                                                                                                                     
## [73] "obs sum total (0.999998) for year (2007) doesn't sum to 1.0"                                                                                                                     
## [74] "obs sum total (0.999999) for year (2008) doesn't sum to 1.0"                                                                                                                     
## [75] "obs sum total (0.999999) for year (2009) doesn't sum to 1.0"                                                                                                                     
## [76] "obs sum total (0.999999) for year (2010) doesn't sum to 1.0"                                                                                                                     
## [77] "obs sum total (0.999999) for year (2015) doesn't sum to 1.0"                                                                                                                     
## [78] "obs sum total (1) for year (2017) doesn't sum to 1.0"                                                                                                                            
## [79] "obs sum total (1) for year (1998) doesn't sum to 1.0"                                                                                                                            
## [80] "Estimates were removed because of matching lower and upper bounds. Originally had 134 estimates, now have 133"                                                                   
## [81] "Found an @estimate block for selectivity[Wspsl].mu. There are only a few time-varying types such as exogenous where this is okay. Please check this is a sensible configuration."
## [82] "estimated parameter 'process[recruit_E].recruitment_multipliers{2001}' was within 0.001 of lower bound 0.06"                                                                     
## [83] "estimated parameter 'process[recruit_W].recruitment_multipliers{2001}' was within 0.001 of lower bound 0.06"                                                                     
## [84] "estimated parameter 'selectivity[CRsl].mu' was within 0.001 of lower bound 1"                                                                                                    
## [85] "estimated parameter 'process[recruit_E].recruitment_multipliers{2001}' was within 0.001 of lower bound 0.06"                                                                     
## [86] "estimated parameter 'process[recruit_W].recruitment_multipliers{2001}' was within 0.001 of lower bound 0.06"                                                                     
## [87] "estimated parameter 'selectivity[CRsl].mu' was within 0.001 of lower bound 1"                                                                                                    
## [1] ""
## [1] "Casal2 adolc_casal_flags_on model warnings"
##  [1] "obs sum total (1) for year (1989) doesn't sum to 1.0"                                                                                                                            
##  [2] "obs sum total (1) for year (1990) doesn't sum to 1.0"                                                                                                                            
##  [3] "obs sum total (0.999999) for year (1991) doesn't sum to 1.0"                                                                                                                     
##  [4] "obs sum total (1) for year (1994) doesn't sum to 1.0"                                                                                                                            
##  [5] "obs sum total (1) for year (1995) doesn't sum to 1.0"                                                                                                                            
##  [6] "obs sum total (1) for year (1996) doesn't sum to 1.0"                                                                                                                            
##  [7] "obs sum total (1) for year (1998) doesn't sum to 1.0"                                                                                                                            
##  [8] "obs sum total (1) for year (2000) doesn't sum to 1.0"                                                                                                                            
##  [9] "obs sum total (0.999999) for year (2001) doesn't sum to 1.0"                                                                                                                     
## [10] "obs sum total (1) for year (2002) doesn't sum to 1.0"                                                                                                                            
## [11] "obs sum total (1) for year (2003) doesn't sum to 1.0"                                                                                                                            
## [12] "obs sum total (0.999998) for year (2004) doesn't sum to 1.0"                                                                                                                     
## [13] "obs sum total (0.999999) for year (2005) doesn't sum to 1.0"                                                                                                                     
## [14] "obs sum total (0.999999) for year (2007) doesn't sum to 1.0"                                                                                                                     
## [15] "obs sum total (1) for year (2008) doesn't sum to 1.0"                                                                                                                            
## [16] "obs sum total (1) for year (2009) doesn't sum to 1.0"                                                                                                                            
## [17] "obs sum total (0.999999) for year (2014) doesn't sum to 1.0"                                                                                                                     
## [18] "obs sum total (1) for year (2015) doesn't sum to 1.0"                                                                                                                            
## [19] "obs sum total (1) for year (2017) doesn't sum to 1.0"                                                                                                                            
## [20] "obs sum total (1) for year (1988) doesn't sum to 1.0"                                                                                                                            
## [21] "obs sum total (0.999999) for year (1989) doesn't sum to 1.0"                                                                                                                     
## [22] "obs sum total (0.999999) for year (1990) doesn't sum to 1.0"                                                                                                                     
## [23] "obs sum total (0.999998) for year (1992) doesn't sum to 1.0"                                                                                                                     
## [24] "obs sum total (0.999999) for year (1996) doesn't sum to 1.0"                                                                                                                     
## [25] "obs sum total (1) for year (1997) doesn't sum to 1.0"                                                                                                                            
## [26] "obs sum total (1) for year (1999) doesn't sum to 1.0"                                                                                                                            
## [27] "obs sum total (1) for year (2002) doesn't sum to 1.0"                                                                                                                            
## [28] "obs sum total (0.999999) for year (2003) doesn't sum to 1.0"                                                                                                                     
## [29] "obs sum total (0.999999) for year (2004) doesn't sum to 1.0"                                                                                                                     
## [30] "obs sum total (1) for year (2005) doesn't sum to 1.0"                                                                                                                            
## [31] "obs sum total (0.999999) for year (2007) doesn't sum to 1.0"                                                                                                                     
## [32] "obs sum total (0.999998) for year (2008) doesn't sum to 1.0"                                                                                                                     
## [33] "obs sum total (0.999999) for year (2009) doesn't sum to 1.0"                                                                                                                     
## [34] "obs sum total (1) for year (2015) doesn't sum to 1.0"                                                                                                                            
## [35] "obs sum total (1) for year (1992) doesn't sum to 1.0"                                                                                                                            
## [36] "obs sum total (0.999999) for year (1998) doesn't sum to 1.0"                                                                                                                     
## [37] "obs sum total (0.999999) for year (1999) doesn't sum to 1.0"                                                                                                                     
## [38] "obs sum total (1) for year (2001) doesn't sum to 1.0"                                                                                                                            
## [39] "obs sum total (1) for year (2004) doesn't sum to 1.0"                                                                                                                            
## [40] "obs sum total (1) for year (2005) doesn't sum to 1.0"                                                                                                                            
## [41] "obs sum total (0.999999) for year (2006) doesn't sum to 1.0"                                                                                                                     
## [42] "obs sum total (1) for year (2008) doesn't sum to 1.0"                                                                                                                            
## [43] "obs sum total (0.999999) for year (2010) doesn't sum to 1.0"                                                                                                                     
## [44] "obs sum total (0.999999) for year (2011) doesn't sum to 1.0"                                                                                                                     
## [45] "obs sum total (0.999999) for year (2012) doesn't sum to 1.0"                                                                                                                     
## [46] "obs sum total (0.999998) for year (2016) doesn't sum to 1.0"                                                                                                                     
## [47] "obs sum total (0.999999) for year (1994) doesn't sum to 1.0"                                                                                                                     
## [48] "obs sum total (0.999999) for year (1996) doesn't sum to 1.0"                                                                                                                     
## [49] "obs sum total (0.999999) for year (2002) doesn't sum to 1.0"                                                                                                                     
## [50] "obs sum total (1) for year (2003) doesn't sum to 1.0"                                                                                                                            
## [51] "obs sum total (0.999999) for year (2004) doesn't sum to 1.0"                                                                                                                     
## [52] "obs sum total (0.999999) for year (2006) doesn't sum to 1.0"                                                                                                                     
## [53] "obs sum total (0.999999) for year (2008) doesn't sum to 1.0"                                                                                                                     
## [54] "obs sum total (1) for year (2011) doesn't sum to 1.0"                                                                                                                            
## [55] "obs sum total (0.999999) for year (2012) doesn't sum to 1.0"                                                                                                                     
## [56] "obs sum total (1) for year (2013) doesn't sum to 1.0"                                                                                                                            
## [57] "obs sum total (1) for year (1992) doesn't sum to 1.0"                                                                                                                            
## [58] "obs sum total (0.999999) for year (1995) doesn't sum to 1.0"                                                                                                                     
## [59] "obs sum total (0.999998) for year (2002) doesn't sum to 1.0"                                                                                                                     
## [60] "obs sum total (0.999999) for year (2004) doesn't sum to 1.0"                                                                                                                     
## [61] "obs sum total (0.999999) for year (2006) doesn't sum to 1.0"                                                                                                                     
## [62] "obs sum total (0.999999) for year (2008) doesn't sum to 1.0"                                                                                                                     
## [63] "obs sum total (1) for year (2009) doesn't sum to 1.0"                                                                                                                            
## [64] "obs sum total (0.999999) for year (2010) doesn't sum to 1.0"                                                                                                                     
## [65] "obs sum total (1) for year (2013) doesn't sum to 1.0"                                                                                                                            
## [66] "obs sum total (1) for year (2016) doesn't sum to 1.0"                                                                                                                            
## [67] "obs sum total (1) for year (2018) doesn't sum to 1.0"                                                                                                                            
## [68] "obs sum total (0.999999) for year (1992) doesn't sum to 1.0"                                                                                                                     
## [69] "obs sum total (0.999999) for year (1993) doesn't sum to 1.0"                                                                                                                     
## [70] "obs sum total (0.999999) for year (2001) doesn't sum to 1.0"                                                                                                                     
## [71] "obs sum total (0.999998) for year (2004) doesn't sum to 1.0"                                                                                                                     
## [72] "obs sum total (0.999999) for year (2006) doesn't sum to 1.0"                                                                                                                     
## [73] "obs sum total (0.999998) for year (2007) doesn't sum to 1.0"                                                                                                                     
## [74] "obs sum total (0.999999) for year (2008) doesn't sum to 1.0"                                                                                                                     
## [75] "obs sum total (0.999999) for year (2009) doesn't sum to 1.0"                                                                                                                     
## [76] "obs sum total (0.999999) for year (2010) doesn't sum to 1.0"                                                                                                                     
## [77] "obs sum total (0.999999) for year (2015) doesn't sum to 1.0"                                                                                                                     
## [78] "obs sum total (1) for year (2017) doesn't sum to 1.0"                                                                                                                            
## [79] "obs sum total (1) for year (1998) doesn't sum to 1.0"                                                                                                                            
## [80] "Estimates were removed because of matching lower and upper bounds. Originally had 134 estimates, now have 133"                                                                   
## [81] "Found an @estimate block for selectivity[Wspsl].mu. There are only a few time-varying types such as exogenous where this is okay. Please check this is a sensible configuration."
## [82] "estimated parameter 'process[recruit_E].recruitment_multipliers{2001}' was within 0.001 of lower bound 0.06"                                                                     
## [83] "estimated parameter 'process[recruit_W].recruitment_multipliers{2001}' was within 0.001 of lower bound 0.06"                                                                     
## [84] "estimated parameter 'selectivity[sel_Whome].v{7}' was within 0.001 of upper bound 1"                                                                                             
## [85] "estimated parameter 'selectivity[Enspsl].sigma_r' was within 0.001 of upper bound 50"                                                                                            
## [86] "estimated parameter 'selectivity[Wnspsl].sigma_r' was within 0.001 of upper bound 50"                                                                                            
## [87] "estimated parameter 'selectivity[CRsl].mu' was within 0.001 of lower bound 1"                                                                                                    
## [88] "estimated parameter 'selectivity[SAsl].sigma_r' was within 0.001 of lower bound 1"                                                                                               
## [89] "estimated parameter 'process[recruit_E].recruitment_multipliers{2001}' was within 0.001 of lower bound 0.06"                                                                     
## [90] "estimated parameter 'process[recruit_W].recruitment_multipliers{2001}' was within 0.001 of lower bound 0.06"                                                                     
## [91] "estimated parameter 'selectivity[sel_Whome].v{7}' was within 0.001 of upper bound 1"                                                                                             
## [92] "estimated parameter 'selectivity[Enspsl].sigma_r' was within 0.001 of upper bound 50"                                                                                            
## [93] "estimated parameter 'selectivity[Wnspsl].sigma_r' was within 0.001 of upper bound 50"                                                                                            
## [94] "estimated parameter 'selectivity[CRsl].mu' was within 0.001 of lower bound 1"                                                                                                    
## [95] "estimated parameter 'selectivity[SAsl].sigma_r' was within 0.001 of lower bound 1"                                                                                               
## [1] ""
## [1] "Casal2 adolc_casal_flags_off model warnings"
##  [1] "obs sum total (1) for year (1989) doesn't sum to 1.0"                                                                                                                            
##  [2] "obs sum total (1) for year (1990) doesn't sum to 1.0"                                                                                                                            
##  [3] "obs sum total (0.999999) for year (1991) doesn't sum to 1.0"                                                                                                                     
##  [4] "obs sum total (1) for year (1994) doesn't sum to 1.0"                                                                                                                            
##  [5] "obs sum total (1) for year (1995) doesn't sum to 1.0"                                                                                                                            
##  [6] "obs sum total (1) for year (1996) doesn't sum to 1.0"                                                                                                                            
##  [7] "obs sum total (1) for year (1998) doesn't sum to 1.0"                                                                                                                            
##  [8] "obs sum total (1) for year (2000) doesn't sum to 1.0"                                                                                                                            
##  [9] "obs sum total (0.999999) for year (2001) doesn't sum to 1.0"                                                                                                                     
## [10] "obs sum total (1) for year (2002) doesn't sum to 1.0"                                                                                                                            
## [11] "obs sum total (1) for year (2003) doesn't sum to 1.0"                                                                                                                            
## [12] "obs sum total (0.999998) for year (2004) doesn't sum to 1.0"                                                                                                                     
## [13] "obs sum total (0.999999) for year (2005) doesn't sum to 1.0"                                                                                                                     
## [14] "obs sum total (0.999999) for year (2007) doesn't sum to 1.0"                                                                                                                     
## [15] "obs sum total (1) for year (2008) doesn't sum to 1.0"                                                                                                                            
## [16] "obs sum total (1) for year (2009) doesn't sum to 1.0"                                                                                                                            
## [17] "obs sum total (0.999999) for year (2014) doesn't sum to 1.0"                                                                                                                     
## [18] "obs sum total (1) for year (2015) doesn't sum to 1.0"                                                                                                                            
## [19] "obs sum total (1) for year (2017) doesn't sum to 1.0"                                                                                                                            
## [20] "obs sum total (1) for year (1988) doesn't sum to 1.0"                                                                                                                            
## [21] "obs sum total (0.999999) for year (1989) doesn't sum to 1.0"                                                                                                                     
## [22] "obs sum total (0.999999) for year (1990) doesn't sum to 1.0"                                                                                                                     
## [23] "obs sum total (0.999998) for year (1992) doesn't sum to 1.0"                                                                                                                     
## [24] "obs sum total (0.999999) for year (1996) doesn't sum to 1.0"                                                                                                                     
## [25] "obs sum total (1) for year (1997) doesn't sum to 1.0"                                                                                                                            
## [26] "obs sum total (1) for year (1999) doesn't sum to 1.0"                                                                                                                            
## [27] "obs sum total (1) for year (2002) doesn't sum to 1.0"                                                                                                                            
## [28] "obs sum total (0.999999) for year (2003) doesn't sum to 1.0"                                                                                                                     
## [29] "obs sum total (0.999999) for year (2004) doesn't sum to 1.0"                                                                                                                     
## [30] "obs sum total (1) for year (2005) doesn't sum to 1.0"                                                                                                                            
## [31] "obs sum total (0.999999) for year (2007) doesn't sum to 1.0"                                                                                                                     
## [32] "obs sum total (0.999998) for year (2008) doesn't sum to 1.0"                                                                                                                     
## [33] "obs sum total (0.999999) for year (2009) doesn't sum to 1.0"                                                                                                                     
## [34] "obs sum total (1) for year (2015) doesn't sum to 1.0"                                                                                                                            
## [35] "obs sum total (1) for year (1992) doesn't sum to 1.0"                                                                                                                            
## [36] "obs sum total (0.999999) for year (1998) doesn't sum to 1.0"                                                                                                                     
## [37] "obs sum total (0.999999) for year (1999) doesn't sum to 1.0"                                                                                                                     
## [38] "obs sum total (1) for year (2001) doesn't sum to 1.0"                                                                                                                            
## [39] "obs sum total (1) for year (2004) doesn't sum to 1.0"                                                                                                                            
## [40] "obs sum total (1) for year (2005) doesn't sum to 1.0"                                                                                                                            
## [41] "obs sum total (0.999999) for year (2006) doesn't sum to 1.0"                                                                                                                     
## [42] "obs sum total (1) for year (2008) doesn't sum to 1.0"                                                                                                                            
## [43] "obs sum total (0.999999) for year (2010) doesn't sum to 1.0"                                                                                                                     
## [44] "obs sum total (0.999999) for year (2011) doesn't sum to 1.0"                                                                                                                     
## [45] "obs sum total (0.999999) for year (2012) doesn't sum to 1.0"                                                                                                                     
## [46] "obs sum total (0.999998) for year (2016) doesn't sum to 1.0"                                                                                                                     
## [47] "obs sum total (0.999999) for year (1994) doesn't sum to 1.0"                                                                                                                     
## [48] "obs sum total (0.999999) for year (1996) doesn't sum to 1.0"                                                                                                                     
## [49] "obs sum total (0.999999) for year (2002) doesn't sum to 1.0"                                                                                                                     
## [50] "obs sum total (1) for year (2003) doesn't sum to 1.0"                                                                                                                            
## [51] "obs sum total (0.999999) for year (2004) doesn't sum to 1.0"                                                                                                                     
## [52] "obs sum total (0.999999) for year (2006) doesn't sum to 1.0"                                                                                                                     
## [53] "obs sum total (0.999999) for year (2008) doesn't sum to 1.0"                                                                                                                     
## [54] "obs sum total (1) for year (2011) doesn't sum to 1.0"                                                                                                                            
## [55] "obs sum total (0.999999) for year (2012) doesn't sum to 1.0"                                                                                                                     
## [56] "obs sum total (1) for year (2013) doesn't sum to 1.0"                                                                                                                            
## [57] "obs sum total (1) for year (1992) doesn't sum to 1.0"                                                                                                                            
## [58] "obs sum total (0.999999) for year (1995) doesn't sum to 1.0"                                                                                                                     
## [59] "obs sum total (0.999998) for year (2002) doesn't sum to 1.0"                                                                                                                     
## [60] "obs sum total (0.999999) for year (2004) doesn't sum to 1.0"                                                                                                                     
## [61] "obs sum total (0.999999) for year (2006) doesn't sum to 1.0"                                                                                                                     
## [62] "obs sum total (0.999999) for year (2008) doesn't sum to 1.0"                                                                                                                     
## [63] "obs sum total (1) for year (2009) doesn't sum to 1.0"                                                                                                                            
## [64] "obs sum total (0.999999) for year (2010) doesn't sum to 1.0"                                                                                                                     
## [65] "obs sum total (1) for year (2013) doesn't sum to 1.0"                                                                                                                            
## [66] "obs sum total (1) for year (2016) doesn't sum to 1.0"                                                                                                                            
## [67] "obs sum total (1) for year (2018) doesn't sum to 1.0"                                                                                                                            
## [68] "obs sum total (0.999999) for year (1992) doesn't sum to 1.0"                                                                                                                     
## [69] "obs sum total (0.999999) for year (1993) doesn't sum to 1.0"                                                                                                                     
## [70] "obs sum total (0.999999) for year (2001) doesn't sum to 1.0"                                                                                                                     
## [71] "obs sum total (0.999998) for year (2004) doesn't sum to 1.0"                                                                                                                     
## [72] "obs sum total (0.999999) for year (2006) doesn't sum to 1.0"                                                                                                                     
## [73] "obs sum total (0.999998) for year (2007) doesn't sum to 1.0"                                                                                                                     
## [74] "obs sum total (0.999999) for year (2008) doesn't sum to 1.0"                                                                                                                     
## [75] "obs sum total (0.999999) for year (2009) doesn't sum to 1.0"                                                                                                                     
## [76] "obs sum total (0.999999) for year (2010) doesn't sum to 1.0"                                                                                                                     
## [77] "obs sum total (0.999999) for year (2015) doesn't sum to 1.0"                                                                                                                     
## [78] "obs sum total (1) for year (2017) doesn't sum to 1.0"                                                                                                                            
## [79] "obs sum total (1) for year (1998) doesn't sum to 1.0"                                                                                                                            
## [80] "Estimates were removed because of matching lower and upper bounds. Originally had 134 estimates, now have 133"                                                                   
## [81] "Found an @estimate block for selectivity[Wspsl].mu. There are only a few time-varying types such as exogenous where this is okay. Please check this is a sensible configuration."
## [82] "estimated parameter 'process[recruit_E].recruitment_multipliers{2001}' was within 0.001 of lower bound 0.06"                                                                     
## [83] "estimated parameter 'process[recruit_W].recruitment_multipliers{2001}' was within 0.001 of lower bound 0.06"                                                                     
## [84] "estimated parameter 'selectivity[sel_Whome].v{7}' was within 0.001 of upper bound 1"                                                                                             
## [85] "estimated parameter 'selectivity[Enspsl].sigma_r' was within 0.001 of upper bound 50"                                                                                            
## [86] "estimated parameter 'selectivity[Wnspsl].sigma_r' was within 0.001 of upper bound 50"                                                                                            
## [87] "estimated parameter 'selectivity[CRsl].mu' was within 0.001 of lower bound 1"                                                                                                    
## [88] "estimated parameter 'selectivity[SAsl].sigma_r' was within 0.001 of lower bound 1"                                                                                               
## [89] "estimated parameter 'process[recruit_E].recruitment_multipliers{2001}' was within 0.001 of lower bound 0.06"                                                                     
## [90] "estimated parameter 'process[recruit_W].recruitment_multipliers{2001}' was within 0.001 of lower bound 0.06"                                                                     
## [91] "estimated parameter 'selectivity[sel_Whome].v{7}' was within 0.001 of upper bound 1"                                                                                             
## [92] "estimated parameter 'selectivity[Enspsl].sigma_r' was within 0.001 of upper bound 50"                                                                                            
## [93] "estimated parameter 'selectivity[Wnspsl].sigma_r' was within 0.001 of upper bound 50"                                                                                            
## [94] "estimated parameter 'selectivity[CRsl].mu' was within 0.001 of lower bound 1"                                                                                                    
## [95] "estimated parameter 'selectivity[SAsl].sigma_r' was within 0.001 of lower bound 1"                                                                                               
## [1] ""
## [1] "Casal2 adolc_casal_flags_on_low_tol model warnings"
##  [1] "obs sum total (1) for year (1989) doesn't sum to 1.0"                                                                                                                            
##  [2] "obs sum total (1) for year (1990) doesn't sum to 1.0"                                                                                                                            
##  [3] "obs sum total (0.999999) for year (1991) doesn't sum to 1.0"                                                                                                                     
##  [4] "obs sum total (1) for year (1994) doesn't sum to 1.0"                                                                                                                            
##  [5] "obs sum total (1) for year (1995) doesn't sum to 1.0"                                                                                                                            
##  [6] "obs sum total (1) for year (1996) doesn't sum to 1.0"                                                                                                                            
##  [7] "obs sum total (1) for year (1998) doesn't sum to 1.0"                                                                                                                            
##  [8] "obs sum total (1) for year (2000) doesn't sum to 1.0"                                                                                                                            
##  [9] "obs sum total (0.999999) for year (2001) doesn't sum to 1.0"                                                                                                                     
## [10] "obs sum total (1) for year (2002) doesn't sum to 1.0"                                                                                                                            
## [11] "obs sum total (1) for year (2003) doesn't sum to 1.0"                                                                                                                            
## [12] "obs sum total (0.999998) for year (2004) doesn't sum to 1.0"                                                                                                                     
## [13] "obs sum total (0.999999) for year (2005) doesn't sum to 1.0"                                                                                                                     
## [14] "obs sum total (0.999999) for year (2007) doesn't sum to 1.0"                                                                                                                     
## [15] "obs sum total (1) for year (2008) doesn't sum to 1.0"                                                                                                                            
## [16] "obs sum total (1) for year (2009) doesn't sum to 1.0"                                                                                                                            
## [17] "obs sum total (0.999999) for year (2014) doesn't sum to 1.0"                                                                                                                     
## [18] "obs sum total (1) for year (2015) doesn't sum to 1.0"                                                                                                                            
## [19] "obs sum total (1) for year (2017) doesn't sum to 1.0"                                                                                                                            
## [20] "obs sum total (1) for year (1988) doesn't sum to 1.0"                                                                                                                            
## [21] "obs sum total (0.999999) for year (1989) doesn't sum to 1.0"                                                                                                                     
## [22] "obs sum total (0.999999) for year (1990) doesn't sum to 1.0"                                                                                                                     
## [23] "obs sum total (0.999998) for year (1992) doesn't sum to 1.0"                                                                                                                     
## [24] "obs sum total (0.999999) for year (1996) doesn't sum to 1.0"                                                                                                                     
## [25] "obs sum total (1) for year (1997) doesn't sum to 1.0"                                                                                                                            
## [26] "obs sum total (1) for year (1999) doesn't sum to 1.0"                                                                                                                            
## [27] "obs sum total (1) for year (2002) doesn't sum to 1.0"                                                                                                                            
## [28] "obs sum total (0.999999) for year (2003) doesn't sum to 1.0"                                                                                                                     
## [29] "obs sum total (0.999999) for year (2004) doesn't sum to 1.0"                                                                                                                     
## [30] "obs sum total (1) for year (2005) doesn't sum to 1.0"                                                                                                                            
## [31] "obs sum total (0.999999) for year (2007) doesn't sum to 1.0"                                                                                                                     
## [32] "obs sum total (0.999998) for year (2008) doesn't sum to 1.0"                                                                                                                     
## [33] "obs sum total (0.999999) for year (2009) doesn't sum to 1.0"                                                                                                                     
## [34] "obs sum total (1) for year (2015) doesn't sum to 1.0"                                                                                                                            
## [35] "obs sum total (1) for year (1992) doesn't sum to 1.0"                                                                                                                            
## [36] "obs sum total (0.999999) for year (1998) doesn't sum to 1.0"                                                                                                                     
## [37] "obs sum total (0.999999) for year (1999) doesn't sum to 1.0"                                                                                                                     
## [38] "obs sum total (1) for year (2001) doesn't sum to 1.0"                                                                                                                            
## [39] "obs sum total (1) for year (2004) doesn't sum to 1.0"                                                                                                                            
## [40] "obs sum total (1) for year (2005) doesn't sum to 1.0"                                                                                                                            
## [41] "obs sum total (0.999999) for year (2006) doesn't sum to 1.0"                                                                                                                     
## [42] "obs sum total (1) for year (2008) doesn't sum to 1.0"                                                                                                                            
## [43] "obs sum total (0.999999) for year (2010) doesn't sum to 1.0"                                                                                                                     
## [44] "obs sum total (0.999999) for year (2011) doesn't sum to 1.0"                                                                                                                     
## [45] "obs sum total (0.999999) for year (2012) doesn't sum to 1.0"                                                                                                                     
## [46] "obs sum total (0.999998) for year (2016) doesn't sum to 1.0"                                                                                                                     
## [47] "obs sum total (0.999999) for year (1994) doesn't sum to 1.0"                                                                                                                     
## [48] "obs sum total (0.999999) for year (1996) doesn't sum to 1.0"                                                                                                                     
## [49] "obs sum total (0.999999) for year (2002) doesn't sum to 1.0"                                                                                                                     
## [50] "obs sum total (1) for year (2003) doesn't sum to 1.0"                                                                                                                            
## [51] "obs sum total (0.999999) for year (2004) doesn't sum to 1.0"                                                                                                                     
## [52] "obs sum total (0.999999) for year (2006) doesn't sum to 1.0"                                                                                                                     
## [53] "obs sum total (0.999999) for year (2008) doesn't sum to 1.0"                                                                                                                     
## [54] "obs sum total (1) for year (2011) doesn't sum to 1.0"                                                                                                                            
## [55] "obs sum total (0.999999) for year (2012) doesn't sum to 1.0"                                                                                                                     
## [56] "obs sum total (1) for year (2013) doesn't sum to 1.0"                                                                                                                            
## [57] "obs sum total (1) for year (1992) doesn't sum to 1.0"                                                                                                                            
## [58] "obs sum total (0.999999) for year (1995) doesn't sum to 1.0"                                                                                                                     
## [59] "obs sum total (0.999998) for year (2002) doesn't sum to 1.0"                                                                                                                     
## [60] "obs sum total (0.999999) for year (2004) doesn't sum to 1.0"                                                                                                                     
## [61] "obs sum total (0.999999) for year (2006) doesn't sum to 1.0"                                                                                                                     
## [62] "obs sum total (0.999999) for year (2008) doesn't sum to 1.0"                                                                                                                     
## [63] "obs sum total (1) for year (2009) doesn't sum to 1.0"                                                                                                                            
## [64] "obs sum total (0.999999) for year (2010) doesn't sum to 1.0"                                                                                                                     
## [65] "obs sum total (1) for year (2013) doesn't sum to 1.0"                                                                                                                            
## [66] "obs sum total (1) for year (2016) doesn't sum to 1.0"                                                                                                                            
## [67] "obs sum total (1) for year (2018) doesn't sum to 1.0"                                                                                                                            
## [68] "obs sum total (0.999999) for year (1992) doesn't sum to 1.0"                                                                                                                     
## [69] "obs sum total (0.999999) for year (1993) doesn't sum to 1.0"                                                                                                                     
## [70] "obs sum total (0.999999) for year (2001) doesn't sum to 1.0"                                                                                                                     
## [71] "obs sum total (0.999998) for year (2004) doesn't sum to 1.0"                                                                                                                     
## [72] "obs sum total (0.999999) for year (2006) doesn't sum to 1.0"                                                                                                                     
## [73] "obs sum total (0.999998) for year (2007) doesn't sum to 1.0"                                                                                                                     
## [74] "obs sum total (0.999999) for year (2008) doesn't sum to 1.0"                                                                                                                     
## [75] "obs sum total (0.999999) for year (2009) doesn't sum to 1.0"                                                                                                                     
## [76] "obs sum total (0.999999) for year (2010) doesn't sum to 1.0"                                                                                                                     
## [77] "obs sum total (0.999999) for year (2015) doesn't sum to 1.0"                                                                                                                     
## [78] "obs sum total (1) for year (2017) doesn't sum to 1.0"                                                                                                                            
## [79] "obs sum total (1) for year (1998) doesn't sum to 1.0"                                                                                                                            
## [80] "Estimates were removed because of matching lower and upper bounds. Originally had 134 estimates, now have 133"                                                                   
## [81] "Found an @estimate block for selectivity[Wspsl].mu. There are only a few time-varying types such as exogenous where this is okay. Please check this is a sensible configuration."
## [82] "estimated parameter 'process[recruit_E].recruitment_multipliers{2001}' was within 0.001 of lower bound 0.06"                                                                     
## [83] "estimated parameter 'process[recruit_W].recruitment_multipliers{2001}' was within 0.001 of lower bound 0.06"                                                                     
## [84] "estimated parameter 'selectivity[Enspsl].sigma_r' was within 0.001 of upper bound 50"                                                                                            
## [85] "estimated parameter 'selectivity[Wnspsl].sigma_r' was within 0.001 of upper bound 50"                                                                                            
## [86] "estimated parameter 'selectivity[CRsl].mu' was within 0.001 of lower bound 1"                                                                                                    
## [87] "estimated parameter 'selectivity[SAsl].sigma_r' was within 0.001 of lower bound 1"                                                                                               
## [88] "estimated parameter 'process[recruit_E].recruitment_multipliers{2001}' was within 0.001 of lower bound 0.06"                                                                     
## [89] "estimated parameter 'process[recruit_W].recruitment_multipliers{2001}' was within 0.001 of lower bound 0.06"                                                                     
## [90] "estimated parameter 'selectivity[Enspsl].sigma_r' was within 0.001 of upper bound 50"                                                                                            
## [91] "estimated parameter 'selectivity[Wnspsl].sigma_r' was within 0.001 of upper bound 50"                                                                                            
## [92] "estimated parameter 'selectivity[CRsl].mu' was within 0.001 of lower bound 1"                                                                                                    
## [93] "estimated parameter 'selectivity[SAsl].sigma_r' was within 0.001 of lower bound 1"

1.5 Matching of outputs

Time series comparisons with CASAL base model results

## [1] "Catch time series base model comparison for run betadiff_casal_flags_on"
## [1] "Actual catches for Ensp1 match: yes"
## [1] "Actual catches for Wnsp1 match: yes"
## [1] "Actual catches for Ensp2 match: yes"
## [1] "Actual catches for Wnsp2 match: yes"
## [1] "Actual catches for Esp match: yes"
## [1] "Actual catches for Wsp match: yes"
## [1] ""
## [1] "Catch time series base model comparison for run betadiff_casal_flags_off"
## [1] "Actual catches for Ensp1 match: yes"
## [1] "Actual catches for Wnsp1 match: yes"
## [1] "Actual catches for Ensp2 match: yes"
## [1] "Actual catches for Wnsp2 match: yes"
## [1] "Actual catches for Esp match: yes"
## [1] "Actual catches for Wsp match: yes"
## [1] ""
## [1] "Catch time series base model comparison for run betadiff_casal_flags_on_low_tol"
## [1] "Actual catches for Ensp1 match: yes"
## [1] "Actual catches for Wnsp1 match: yes"
## [1] "Actual catches for Ensp2 match: yes"
## [1] "Actual catches for Wnsp2 match: yes"
## [1] "Actual catches for Esp match: yes"
## [1] "Actual catches for Wsp match: yes"
## [1] ""
## [1] "Catch time series base model comparison for run adolc_casal_flags_on"
## [1] "Actual catches for Ensp1 match: yes"
## [1] "Actual catches for Wnsp1 match: yes"
## [1] "Actual catches for Ensp2 match: yes"
## [1] "Actual catches for Wnsp2 match: yes"
## [1] "Actual catches for Esp match: yes"
## [1] "Actual catches for Wsp match: yes"
## [1] ""
## [1] "Catch time series base model comparison for run adolc_casal_flags_off"
## [1] "Actual catches for Ensp1 match: yes"
## [1] "Actual catches for Wnsp1 match: yes"
## [1] "Actual catches for Ensp2 match: yes"
## [1] "Actual catches for Wnsp2 match: yes"
## [1] "Actual catches for Esp match: yes"
## [1] "Actual catches for Wsp match: yes"
## [1] ""
## [1] "Catch time series base model comparison for run adolc_casal_flags_on_low_tol"
## [1] "Actual catches for Ensp1 match: yes"
## [1] "Actual catches for Wnsp1 match: yes"
## [1] "Actual catches for Ensp2 match: yes"
## [1] "Actual catches for Wnsp2 match: yes"
## [1] "Actual catches for Esp match: yes"
## [1] "Actual catches for Wsp match: yes"
## [1] ""

Derived quantities

SB0, SBcurrent, MSY, F_MSY, others...

1.6 Plots

Comparison plots

## [1] "CASAL base parameter correlation range (excluding 1.0): -0.943 0.9969"

## [1] "CASAL sensitivity 1 parameter correlation range (excluding 1.0): -0.9392 0.9969"

## [1] "Casal2 betadiff_casal_flags_on parameter correlation range (excluding 1.0): -0.889119 0.996661"

## [1] "Casal2 betadiff_casal_flags_off parameter correlation range (excluding 1.0): -0.889119 0.996661"

## [1] "Casal2 betadiff_casal_flags_on_low_tol parameter correlation range (excluding 1.0): -0.922161 0.996675"

## [1] "Casal2 adolc_casal_flags_on parameter correlation range (excluding 1.0): -0.889506 0.996661"

## [1] "Casal2 adolc_casal_flags_off parameter correlation range (excluding 1.0): -0.889506 0.996661"

## [1] "Casal2 adolc_casal_flags_on_low_tol parameter correlation range (excluding 1.0): -0.993973 0.996672"